BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0148800 Os11g0148800|Os11g0148800
         (310 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22760.1  | chr5:7571635-7577662 FORWARD LENGTH=1567            64   7e-11
AT5G35210.1  | chr5:13474499-13482238 REVERSE LENGTH=1707          64   1e-10

>AT5G22760.1 | chr5:7571635-7577662 FORWARD LENGTH=1567
          Length = 1566

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 52   FGLIWKRSKNDLRSSKLKADDVILRSRDGVGSPMKPTCFLCFKPYRSDLMYIRCESCRNW 111
            +G+IW++          + ++V+L  R    + ++P C++C  PY   L YI C SC  W
Sbjct: 1209 WGVIWRKKNLADTGVSFRHENVMLAGRSDQPN-LQPVCWICKLPYNPGLTYIHCTSCDMW 1267

Query: 112  FHGDALELEEGRIAQLISYXXXXXXXXPLPKCPHSD 147
            +H +A++LEE +I +++ +          P CP+ D
Sbjct: 1268 YHIEAVKLEESKIPEVVGFKCCRCRRIRSPDCPYMD 1303



>AT5G35210.1 | chr5:13474499-13482238 REVERSE LENGTH=1707
          Length = 1706

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 44   RTTQEITFFGLIWKRSKNDLRSSKLKADDVILRSRDGVGSPMKPTCFLCFKPYRSDLMYI 103
            ++ Q+    G+IW++   +      +  +++L  R    S ++P C +C  PY   L YI
Sbjct: 1194 KSKQKTLSCGVIWRKKNVEDTGVDFRNQNILLAGRSDKPS-LEPVCGICLLPYNPGLTYI 1252

Query: 104  RCESCRNWFHGDALELEEGRIAQLISYXXXXXXXXPLPKCPHSD 147
             C  C  WFH +A++L++ +I +++ +          P CP+ D
Sbjct: 1253 HCTKCEKWFHTEAVKLKDSQIPEVVGFKCCKCRRIRSPDCPYMD 1296



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,965,406
Number of extensions: 296530
Number of successful extensions: 737
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 3
Length of query: 310
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 212
Effective length of database: 8,419,801
Effective search space: 1784997812
Effective search space used: 1784997812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)