BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0148000 Os11g0148000|AK108267
         (265 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08960.1  | chr1:2879698-2881877 FORWARD LENGTH=547             69   3e-12

>AT1G08960.1 | chr1:2879698-2881877 FORWARD LENGTH=547
          Length = 546

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 74/193 (38%), Gaps = 5/193 (2%)

Query: 16  DPPGILDYGAIHACLLGGDRRXXXXXXXXXXXXXXXXXXXXXGTHFSPAVSRLAARLRLS 75
           D  G+++Y ++H C+   +                        THFS   ++LA RL LS
Sbjct: 70  DNGGVINYFSLHYCIFNENLFFSIPILSLLILLHFYILIKTAQTHFSTVTTKLADRLNLS 129

Query: 76  PSMAAVTLLALXXXXXXXXXXXXXXXXXXXXXXXXXXXILXXXXXXXXXXXXXXXLIXXX 135
           PSMAAVTLLAL                           IL               +    
Sbjct: 130 PSMAAVTLLALGNGAPDVFASVAALRGGQYRTGFGA--ILSAGTFVSAFVVGFVAIYAAP 187

Query: 136 XXXXXXXXXRDVFFYLLAASGLFYIYLSAEIYLWQAIXXXXXXXXXXXXXXXMDLDA--- 192
                    RDV FYL+AA  LFY+YLS EI++WQAI               MD      
Sbjct: 188 FPVDAASFVRDVLFYLIAALFLFYVYLSGEIFVWQAIGFVGFYIFFVGFVFWMDFGTNVE 247

Query: 193 EGKAVSTTELEVV 205
           +GK++S  E +++
Sbjct: 248 KGKSISEEEKDLL 260



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,335,209
Number of extensions: 83504
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)