BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0147100 Os11g0147100|AK073054
         (246 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03250.2  | chr1:793576-795159 REVERSE LENGTH=252              253   6e-68

>AT1G03250.2 | chr1:793576-795159 REVERSE LENGTH=252
          Length = 251

 Score =  253 bits (646), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/253 (51%), Positives = 177/253 (69%), Gaps = 12/253 (4%)

Query: 1   MASADLLRREEEFYASLFDSAKGGDAVKSRGQMIERKIEVLEDMAAKVSNRRSRRWLNDR 60
           MA+ +++RR+E    SL    + GD   SRG  +E+KIE LE +A +VSNRRSRRWLNDR
Sbjct: 1   MAATNVMRRDE----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLNDR 56

Query: 61  LLIELVPRLHVEEIKGLFAPPPWGEELPVSAFCRTSVGEWDAFRSIDMDVE------ARL 114
           +L+ELVPRL  +EI+GLFAPPPWG+++P SAF  T+VGEWD FR+IDMD E      A +
Sbjct: 57  ILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEELCFFQANI 116

Query: 115 VQQMKQSSTKQKNHLDRDELVALNSWHHIDRQTREAIKRNFLPDLLEIYEERVRTFIEDT 174
           +  + +SS +QK  +D D++  LN+W  ID +TR+A++R+FLP+L+E YE  +  FIE+ 
Sbjct: 117 MDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEEG 176

Query: 175 SGKDMLVLNVQDPFQRLLLHGVCEFYNVSSTTTTTVRDGKLCKTTAIK-KRSG-TGAPSR 232
              D+L L VQDPF RLLLHGVCE++N+ STT T        KTT+IK K+SG +G    
Sbjct: 177 GEGDVLELKVQDPFHRLLLHGVCEYHNLVSTTATEQIGRIAMKTTSIKWKKSGDSGEKPS 236

Query: 233 ITLVSFLRMKKKS 245
           I+L  FLRM K+ 
Sbjct: 237 ISLAHFLRMSKEG 249



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,180,326
Number of extensions: 205481
Number of successful extensions: 548
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)