BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0145400 Os11g0145400|009-117-C07
         (43 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45180.1  | chr3:16538991-16539212 REVERSE LENGTH=74            71   9e-14
AT5G42300.1  | chr5:16913611-16913832 REVERSE LENGTH=74            71   1e-13

>AT3G45180.1 | chr3:16538991-16539212 REVERSE LENGTH=74
          Length = 73

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 43/73 (58%), Gaps = 30/73 (41%)

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGD------------------------------LKDY 30
          MIEVVLNDRLGKKVRVKCNE+DTIGD                              LKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 31 EIHDGMGLELYYN 43
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73



>AT5G42300.1 | chr5:16913611-16913832 REVERSE LENGTH=74
          Length = 73

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 43/73 (58%), Gaps = 30/73 (41%)

Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGD------------------------------LKDY 30
          MIEVVLNDRLGKKVRVKCN+DDTIGD                              LKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 31 EIHDGMGLELYYN 43
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.144    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,032,688
Number of extensions: 26623
Number of successful extensions: 69
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 43
Length of database: 11,106,569
Length adjustment: 17
Effective length of query: 26
Effective length of database: 10,640,497
Effective search space: 276652922
Effective search space used: 276652922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)