BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0140900 Os11g0140900|Os11g0140900
         (274 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03990.1  | chr5:1075957-1077358 FORWARD LENGTH=303            105   3e-23
AT3G51940.1  | chr3:19273708-19275157 REVERSE LENGTH=454           91   6e-19

>AT5G03990.1 | chr5:1075957-1077358 FORWARD LENGTH=303
          Length = 302

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 2/114 (1%)

Query: 33  NCH-PIPLWEREFCIYVGGISWHRFCDNKRYVCMYKNIEQWDDSEAFDNFKNAKARFWAN 91
           NC   +P WE++FC  +G + W +  + KR++ +Y  + QWDDS   D FKNAK+RFWA 
Sbjct: 36  NCKISVPAWEKDFCAVIGSVPWWKVVEAKRFMHIYDRVVQWDDSAGEDAFKNAKSRFWAE 95

Query: 92  YHGQPSDISLPDPDMYIDKVDHNSKIDPELIADLNMVRLPFEMDDE-LLPADGL 144
            +G   D+SLPDPD+YID VD ++++D ELI DL     P   + E ++  D L
Sbjct: 96  INGLTCDLSLPDPDVYIDDVDWDAEVDNELILDLERGPDPLTEEQEHVVILDAL 149



>AT3G51940.1 | chr3:19273708-19275157 REVERSE LENGTH=454
          Length = 453

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 37  IPLWEREFCIYVGGISWHRFCDNKRYVCMYK-NIEQWDDSEAFDNFKNAKARFWANYHGQ 95
           IP+WE+ FC  +G + W +  + K +   Y  N+  WDDS   D F N K RFW+  +G 
Sbjct: 33  IPVWEKRFCEVIGSVPWQKVVEAKDFKSWYNGNVITWDDSACEDTFHNEKKRFWSQVNGL 92

Query: 96  PSDISLPDPDMYIDKVDHNSKIDPELIADL 125
             D+S+PDPD+YI +VD ++ +DPELI DL
Sbjct: 93  HCDVSIPDPDLYISEVDWDTFVDPELIRDL 122



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,383,861
Number of extensions: 267572
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 2
Length of query: 274
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,447,217
Effective search space: 1495157409
Effective search space used: 1495157409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)