BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0140600 Os11g0140600|AK103409
(308 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10300.3 | chr3:3186436-3188071 FORWARD LENGTH=336 339 1e-93
AT5G04170.1 | chr5:1145579-1147519 FORWARD LENGTH=355 332 2e-91
AT2G27480.1 | chr2:11746811-11747885 FORWARD LENGTH=229 161 3e-40
AT4G37010.2 | chr4:17444315-17445380 FORWARD LENGTH=172 51 9e-07
AT3G22930.1 | chr3:8124286-8125835 REVERSE LENGTH=174 48 6e-06
AT3G50360.1 | chr3:18674421-18675502 FORWARD LENGTH=170 48 6e-06
>AT3G10300.3 | chr3:3186436-3188071 FORWARD LENGTH=336
Length = 335
Score = 339 bits (870), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 156/183 (85%), Positives = 172/183 (93%)
Query: 126 FASLVPSAFPPGTDPNVVACFQAADRDGSGMIDDKELQSALSGYSQSFSLRTVHLLMYLF 185
FASLVPSAFPPGTDPN+VACFQAADRD SG IDDKELQ ALS Y+QSFS+RTVHLLMYLF
Sbjct: 153 FASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLF 212
Query: 186 TNTNVRKIGPKEFTSVFYSLQNWRSIFERFDRDQSGKIDATELRDALLSLGYSVSPTVLD 245
TN+NVRKIGPKEFTS+F+SLQNWRSIFERFD+D+SG+ID ELRDAL+SLG+SVSP +LD
Sbjct: 213 TNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILD 272
Query: 246 LLVSKFDKTGGKNKAIEYDNFIECCLTVKGLTEKFKEKDTAFSGSATFTYEAFMLTVLPF 305
LLVSKFDK+GG+N+AIEYDNFIECCLTVKGLTEKFKEKDTA SGSA F YE FMLTVLPF
Sbjct: 273 LLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTALSGSAIFNYENFMLTVLPF 332
Query: 306 LIA 308
L+A
Sbjct: 333 LVA 335
>AT5G04170.1 | chr5:1145579-1147519 FORWARD LENGTH=355
Length = 354
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 154/183 (84%), Positives = 169/183 (92%)
Query: 126 FASLVPSAFPPGTDPNVVACFQAADRDGSGMIDDKELQSALSGYSQSFSLRTVHLLMYLF 185
FASL+PS F PGTDPN+VACFQAAD+DGSG IDDKELQ ALS Y Q FS+RTVHLLMYLF
Sbjct: 172 FASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLF 231
Query: 186 TNTNVRKIGPKEFTSVFYSLQNWRSIFERFDRDQSGKIDATELRDALLSLGYSVSPTVLD 245
TN+N KIGPKEFT++FYSLQNWRSIFER D+D+SG+ID ELRDALLSLG+SVSP VLD
Sbjct: 232 TNSNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVLD 291
Query: 246 LLVSKFDKTGGKNKAIEYDNFIECCLTVKGLTEKFKEKDTAFSGSATFTYEAFMLTVLPF 305
LLVSKFDK+GGKN+AIEYDNFIECCLTVKGLTEKFKEKDTA+SGSATF YE+FMLTVLPF
Sbjct: 292 LLVSKFDKSGGKNRAIEYDNFIECCLTVKGLTEKFKEKDTAYSGSATFNYESFMLTVLPF 351
Query: 306 LIA 308
LIA
Sbjct: 352 LIA 354
>AT2G27480.1 | chr2:11746811-11747885 FORWARD LENGTH=229
Length = 228
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 122/177 (68%), Gaps = 5/177 (2%)
Query: 134 FPPGTDPNVVACFQAADRDGSGMIDDKELQSALS--GYSQSFSLRTVHLLMYLFTNT--N 189
F P T P +V F++ADR+ SG +++ EL+ ALS GY S RT+ LL++++ +
Sbjct: 49 FSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYD-GISNRTIRLLLFIYKIPVDS 107
Query: 190 VRKIGPKEFTSVFYSLQNWRSIFERFDRDQSGKIDATELRDALLSLGYSVSPTVLDLLVS 249
+ ++GPKE+ ++ L WR+IF R+DRD+SGK+++T+LRDA +LG + +V L+VS
Sbjct: 108 LLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLGCVLPTSVHQLIVS 167
Query: 250 KFDKTGGKNKAIEYDNFIECCLTVKGLTEKFKEKDTAFSGSATFTYEAFMLTVLPFL 306
+FD GK + +D+F+EC + VKGLTEKF+E D ++G AT +Y+ FML V+PF+
Sbjct: 168 QFDDGTGKTVDLCFDSFLECGMIVKGLTEKFRENDPGYTGYATLSYDVFMLMVIPFI 224
>AT4G37010.2 | chr4:17444315-17445380 FORWARD LENGTH=172
Length = 171
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 16/108 (14%)
Query: 191 RKIGPKEFTSVFYSLQNW-----RSIFERFDRDQSGKIDATELRDALLSLGYSVSPTVLD 245
R + PK T Y L N R IF+ FD D SG IDA+EL A+ SLG+ ++ ++
Sbjct: 13 RGLKPKGKT---YGLTNQKRREIREIFDLFDIDGSGSIDASELNVAMRSLGFEMNNQQIN 69
Query: 246 LLVSKFDKTGGKNKAIEYDNFIECCLTVKGLTEKFKEKDTAFSGSATF 293
L+++ DK ++ AI++D F+ +T KF E+D+ S F
Sbjct: 70 ELMAEVDKN--QSGAIDFDEFVHM------MTTKFGERDSIDELSKAF 109
>AT3G22930.1 | chr3:8124286-8125835 REVERSE LENGTH=174
Length = 173
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 150 DRDGSGMIDDKELQSALSGYSQSFSLRTVHLLMYLFTNTNVRKIGPKEFTSVFYSLQNW- 208
D+DG G I EL + + Q+ T L + T + G EF+ + N
Sbjct: 44 DKDGDGCITADELATVIRSLDQN---PTEQELQDMITEIDSDGNGTIEFSEFLNLMANQL 100
Query: 209 ---------RSIFERFDRDQSGKIDATELRDALLSLGYSVSPTVLDLLVSKFDKTGGKNK 259
+ F+ FD+DQ+G I A+ELR +++LG ++ +D ++ + D G +
Sbjct: 101 QETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDG--DG 158
Query: 260 AIEYDNFI 267
+ YD F+
Sbjct: 159 QVNYDEFV 166
>AT3G50360.1 | chr3:18674421-18675502 FORWARD LENGTH=170
Length = 169
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 206 QNWRSIFERFDRDQSGKIDATELRDALLSLGYSVSPTVLDLLVSKFDKTGGKNKAIEYDN 265
Q + FE FD D SG IDA EL A+ +LG+ ++ ++ +++ DK G + AI++D
Sbjct: 26 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDG--SGAIDFDE 83
Query: 266 FIECCLTVKGLTEKFKEKDT 285
F+ +T K E+DT
Sbjct: 84 FVHM------MTAKIGERDT 97
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,035,599
Number of extensions: 159280
Number of successful extensions: 665
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 6
Length of query: 308
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 210
Effective length of database: 8,419,801
Effective search space: 1768158210
Effective search space used: 1768158210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)