BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0137300 Os11g0137300|AK121066
(1110 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26780.1 | chr2:11410125-11423598 FORWARD LENGTH=1827 1250 0.0
>AT2G26780.1 | chr2:11410125-11423598 FORWARD LENGTH=1827
Length = 1826
Score = 1250 bits (3234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/1115 (56%), Positives = 801/1115 (71%), Gaps = 36/1115 (3%)
Query: 21 LDRMLTRLALAEDXXXXXXXXXXXXXXITSLASATASVRKLVMEILSHINKRVKHRPEIS 80
LDRMLTRLAL +D I+SL+S + VR V+EILSH+NKRVKH+ EI
Sbjct: 22 LDRMLTRLALCDDSKLESLVSNLLPLTISSLSSQSPVVRNKVLEILSHVNKRVKHQHEIG 81
Query: 81 LPMLDLWRIYTESTSSTIVRNFCIVYIEMAFERLLSEDKGSIAPDLLINISNVTEQHQGI 140
LP+L LW++YT+ ++ +VRNF IVY+EMAFER ++++ IAP+ L N+S + +QHQ I
Sbjct: 82 LPLLALWKLYTDPAAAPMVRNFAIVYVEMAFERAPAKEREEIAPNTLENVSKLPKQHQEI 141
Query: 141 ILRLVVKAIGECNTHKVGDNVASKYQSISGSNDGLVFADFCFHTVLYQTPPQGVGCPAGL 200
ILR+ +K IGEC+ K+ D+V++KY+S+ S D +F DFC H +LYQ QG G GL
Sbjct: 142 ILRIAIKVIGECHASKISDDVSAKYRSLITSQDKDLFLDFCLHMLLYQPSSQGGGSSPGL 201
Query: 201 SVAQSDRVTGKQPLKGDTLTSRKLGILNVIEAMQLAPEIVYPLYLAAASDSQESVTKRGE 260
SV Q +R+ GKQ LKGDTLT RKLGILNVI M L E VYPLY+AA+ DSQE V KRGE
Sbjct: 202 SVFQVNRIIGKQALKGDTLTRRKLGILNVIGNMDLPGESVYPLYIAASVDSQEPVAKRGE 261
Query: 261 ELLKRKASAVNLEDSNLMKKLFTLFNGTASPENIAAELKVAPAHSSLRVRLMGVFCRSIA 320
ELLK+ AS NL+D L+ +LF LFNGT EN+A E VAP + SL+++LM FCRSIA
Sbjct: 262 ELLKKIASGTNLDDPKLINRLFLLFNGTTGTENVAPEHNVAPGNISLKMKLMSGFCRSIA 321
Query: 321 AANAFPYTLQCIFGCIYGNGTTSRLKQLGMEFTVWVFKHAANDQLKLIGPVILSGILRSL 380
AAN+FP TLQCIFGC+YG+GTT RLKQ+GMEFTVWVFKH DQLKL+GPVIL+ IL+ L
Sbjct: 322 AANSFPATLQCIFGCMYGSGTTLRLKQMGMEFTVWVFKHGKIDQLKLMGPVILNAILKML 381
Query: 381 DGSSTTEADSSSRDIKIFAYQAIGLLATRMPNLFSNKTDMAIRLFTALRLEEQSLRLTIQ 440
DG + +E D+ SR+ K F++QAIGLLA R+P LF KT+MA+RLF AL+LE QSLR TIQ
Sbjct: 382 DGFTGSETDALSRETKTFSFQAIGLLAQRLPQLFREKTEMAVRLFDALKLETQSLRSTIQ 441
Query: 441 EXXXXXXXXYKGASVVILKDIEALLLENS--------------QMEQSEVRFSAVRWATT 486
E YK + IL+D+E LLL NS EQ+E RF A+RWAT+
Sbjct: 442 EAIVSLAAAYKDSPENILRDLEVLLLANSLAGFIKSSIFIASIDQEQNEARFCALRWATS 501
Query: 487 LYDMKHCPSRYICMLGASDVKLDIREMALTGLNLLNDERESFAIATDSNYPDIADMVNYV 546
LY+ HCPS YICML A+D KLDIRE+AL GL L +E S D YP +M+ Y+
Sbjct: 502 LYNSHHCPSLYICMLSAADPKLDIREIALEGL-FLKEEGRSIVSNHDHKYPKFIEMLEYI 560
Query: 547 YSQQPQLLHCDEQRNGKLLFPTKTFLAMIKFLMKCFQ--------KSDGSDFLQEDLSNC 598
QQP+LL E R+ KLLFP++ +L MIKFL+KCF+ ++ G++FL
Sbjct: 561 LKQQPKLLDSSEMRSQKLLFPSQVYLVMIKFLVKCFELEMEESNTQAVGTEFLDS----- 615
Query: 599 PVSKLCIILEHAMSYEGSSELHALALKSLVDISSRQPKLVSSRYVNRLLWLRTLLGHVDA 658
K+C +LEH++++EGS+ELHA A K+LV + S P++V + +++WLR+LL H D
Sbjct: 616 -AQKMCSLLEHSLAFEGSAELHACASKALVSVGSYLPEMVELYFSRKIVWLRSLLSHTDL 674
Query: 659 DAREATSRXXXXXXXXXXXXXXXXXXXXXXXXFDQNRPSRFENYHGLLCAIGYITAGCLK 718
RE+ SR Q + RFE HG LCA+G+++A CL
Sbjct: 675 STRESVSRLLGMASCALSDAESCSLLSELISSISQPQKLRFEAQHGGLCAVGFVSAHCLH 734
Query: 719 E-SYITEEIVQKSIDVLVKVVESEGSALASTAMEALGHIGLHCLLPS-INRNSSQAALLT 776
+++ + Q ++ LV+VV E + LAS AMEALGHIG+ LP +N +S +L
Sbjct: 735 RIPTVSKAVTQNAVKYLVEVVNLETAPLASVAMEALGHIGICGALPFLVNDSSPGTQVLE 794
Query: 777 ILNEKLAKLLSENDTKAIQKILISLGHLSWNELSFAHLNNALDLIFSLSRSKVEEVLFAA 836
IL E+L+KLLS +D K++QKI +SLGH+ NE S +HL ALDL+FSLSRSK EE+LFAA
Sbjct: 795 ILQERLSKLLSGDDIKSVQKIALSLGHICSNETSSSHLKIALDLLFSLSRSKAEEILFAA 854
Query: 837 GEALSFIWGEVPVTTDVILETNFVSLSQATNYLTGDAPVLVSSNSNKGSDCEE-AHAMAR 895
GEALSF+WG VPVT D+IL+TN+ SLS +N+L + V S S+ +D EE + R
Sbjct: 855 GEALSFLWGGVPVTADMILKTNYTSLSTDSNFLMKE----VKSLSDVKTDTEEDSRTTTR 910
Query: 896 EEIIKRLFDTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQND 955
E I +LFDTL+YSSRKEERCAGTVW++SLTMYCGQ P I +LP+IQEA +HLLGDQN+
Sbjct: 911 ETITGKLFDTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQEAFSHLLGDQNE 970
Query: 956 LTQDLASQGMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNN 1015
LTQ+LASQGMSI+YELGDASMK+ LV ALVNTL+G +K+KRAIKL+E+SEVFQEGTIG +
Sbjct: 971 LTQELASQGMSIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVFQEGTIGES 1030
Query: 1016 PTGGKLSTYKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQ 1075
P+GGK+STYKELC+LANEMGQPDLIYKFMDLAN+QA++NSKRGAAFGFSKIAKQAG+AL+
Sbjct: 1031 PSGGKISTYKELCNLANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDALR 1090
Query: 1076 PHLHTLIPRLVRYQYDPDKNIQDSMAHIWKLIVAD 1110
PHL LIPRL+RYQYDPDKN+QD+MAHIWK ++ D
Sbjct: 1091 PHLRLLIPRLIRYQYDPDKNVQDAMAHIWKALIQD 1125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,698,502
Number of extensions: 817278
Number of successful extensions: 2123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2116
Number of HSP's successfully gapped: 1
Length of query: 1110
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 1001
Effective length of database: 8,118,225
Effective search space: 8126343225
Effective search space used: 8126343225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)