BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0136500 Os11g0136500|Os11g0136500
         (283 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11470.2  | chr3:3610261-3612094 REVERSE LENGTH=301             62   3e-10

>AT3G11470.2 | chr3:3610261-3612094 REVERSE LENGTH=301
          Length = 300

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 23/219 (10%)

Query: 36  AALLPPHDRPAIHRFVREDDRKRALVSRLLQYSLVHHALG---IPFHQIRINRTLEGKPY 92
           + LL P ++  + +   ++ +K AL++R L  + +   +    +    +   + + GKP 
Sbjct: 51  SQLLSPTEKEKVLQMRGDELKKNALLARTLVRTTIARCMTNNEVDPKALMFKKNMYGKPE 110

Query: 93  L--QN-KNANFPGFNFNTSHQGEYVGIASEPLCLVGLDIVCISKPQRETALEFINNFTSY 149
           +  QN  N N P  +FN SH    +         VG+D+    +  +   L F   F S 
Sbjct: 111 VDWQNYTNCNNPPLHFNISHTDSLIACGVTVHVPVGIDVEDKERKIKHDILAFAERFYSA 170

Query: 150 LTDHEWNCIVTAGSHDGMLTEFYRYWCLKEAFVKATGAGVG------FGLQ-----RLEF 198
               E   + T    +    EF + W LKEA+VKA G G        F +Q     + E+
Sbjct: 171 ---DEVKFLSTLPDPEVQRKEFIKLWTLKEAYVKALGKGFSAAPFNTFTIQSKVGTKGEY 227

Query: 199 HHMNWTNI---SLRIDGEEDRKWRFWLFKIDEKHLASIA 234
           +    T +   SL    + D +W+F L ++D+ H A+I 
Sbjct: 228 NLCKMTEMTASSLEETNKCDGEWKFSLLELDDSHYAAIC 266



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,621,513
Number of extensions: 284241
Number of successful extensions: 631
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)