BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0136400 Os11g0136400|Os11g0136400
(427 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479 305 3e-83
AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485 303 2e-82
AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487 283 2e-76
AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810 62 7e-10
>AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479
Length = 478
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 159/329 (48%), Positives = 215/329 (65%), Gaps = 4/329 (1%)
Query: 94 LQAYAVEVCRPEHQSIGLSLVSTSWAIGLIVGPAIGGYLAQPSEKYPILFPANSLFGRFP 153
++AYA+E+ R E+Q + LS VST+W IGLI+GPAIGG+LAQP+++YP LF +S+FG+FP
Sbjct: 150 IKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIFGKFP 209
Query: 154 YFLPCLCISIFCFVILISCIWLPETLHKHATERNGDCKIGSLSTHLVDSEEFVKQHTGPA 213
+FLPCL IS+F F++ I +PETLH H + N D +L L D E K
Sbjct: 210 FFLPCLAISVFAFLVTIVSSRIPETLHNH--KFNDDESYDALK-DLSDDPESNKVAERNG 266
Query: 214 KDKSLFKNWPLMSSIVLFCIVSFDDMAYTEIFSLWSESDKQFGGLNFSSEDVGQVLAITG 273
K SL NWPL+SSI+++C+ S DMAYTEIFSLW+ S +++GGL +S+ DVG VLA +G
Sbjct: 267 KS-SLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLAFSG 325
Query: 274 ASILIYQTFIYPHIVKVLGIINTSRVAVILSMAILCSYPPMTYLSRPWLSIVVNIASMLK 333
+LI+Q +Y + ++LG I +R++ L+M +L YP + LS L++ V AS+ K
Sbjct: 326 FGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIAKLSGLALTVTVTSASVAK 385
Query: 334 NNFVVTINTCSFILQNNSVPQHQRATANGLATTLMSFFKAFAPAGAGILFSWAQKRQHAF 393
+ + T FILQN +V Q QR ANG+A T MS FKA PA AGI+FSW++KRQ A
Sbjct: 386 SVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIGPAAAGIIFSWSEKRQGAA 445
Query: 394 FFPGDQMVXXXXXXXXXXXXXWTFKPFLA 422
F PG QMV TFKPFLA
Sbjct: 446 FLPGTQMVFFILNVVLALGVVLTFKPFLA 474
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 51/71 (71%)
Query: 18 QYHEGCPACAVERSKAVNPGIPYMRFFHIWIIILVSCLPISSLFPFLYFMIRDLHVAKRV 77
+HE C C V++ K + G P+ F +WII+L + LPISSLFPFLYFMI D ++AK+
Sbjct: 13 NFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAKKE 72
Query: 78 EDIGFYAGFVA 88
EDIGFYAGFV
Sbjct: 73 EDIGFYAGFVG 83
>AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485
Length = 484
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 220/340 (64%), Gaps = 18/340 (5%)
Query: 94 LQAYAVEVCRPEHQSIGLSLVSTSWAIGLIVGPAIGGYLAQPSEKYPILFPANSLFGRFP 153
++AYA EV E+ ++ LS+VSTS IGLI+GPAIGGYLAQP+EKYP +F +S+FGRFP
Sbjct: 149 IRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKYPNIFSQSSVFGRFP 208
Query: 154 YFLPCLCISIFCFVILISCIWLPETLHKHATERNGDCKIGSLSTHLVDSEEFVKQHTGPA 213
YFLP L IS++ +LI+C WLPETLH G T L D E + G
Sbjct: 209 YFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLN----PTELNDDE---SRGGGLD 261
Query: 214 KDK-----SLFKNWPLMSSIVLFCIVSFDDMAYTEIFSLWSESDKQFGGLNFSSEDVGQV 268
+ K SL +N PLM+ I+++C+ S ++AY EIFSLW+ SD+ +GGL+FSS+DVG+V
Sbjct: 262 EQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSFSSQDVGEV 321
Query: 269 LAITGASILIYQTFIYPHIVKVLGIINTSRVAVILSMAILCSYPPMTYLSRPWLSIVVNI 328
LAI+G +L++Q +YP + K +G++ R++ +L + +L YP + LS L +V+N
Sbjct: 322 LAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGVTLHLVINC 381
Query: 329 ASMLKNNFVVTINTCSFILQNNSVPQHQRATANGLATTLMSFFKAFAPAGAGILFSWAQK 388
AS++KN +++ T FI+ N +VPQ+QR ANG++ T MS FK+F PAG G+LFSWAQK
Sbjct: 382 ASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGGVLFSWAQK 441
Query: 389 RQHAFFFPG------DQMVXXXXXXXXXXXXXWTFKPFLA 422
RQ A F PG D+MV TF P+++
Sbjct: 442 RQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYIS 481
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 6/88 (6%)
Query: 1 MAAGDAATPLLVLETAYQYHEGCPACAVERSKAVNPGIPYMRFFHIWIIILVSCLPISSL 60
MA ++ T LL + +E CP C ++R+K G+PY+ IW++ L + LPISSL
Sbjct: 1 MADDESRTILL------EKNEDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSL 54
Query: 61 FPFLYFMIRDLHVAKRVEDIGFYAGFVA 88
FP++YFMIRD H+AK+ EDIGFYAGFV
Sbjct: 55 FPYIYFMIRDFHIAKQEEDIGFYAGFVG 82
>AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487
Length = 486
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/339 (45%), Positives = 210/339 (61%), Gaps = 19/339 (5%)
Query: 94 LQAYAVEVCRPEHQSIGLSLVSTSWAIGLIVGPAIGGYLAQPSEKYPILFPANSLFGRFP 153
++AYA E+ R E+Q+ +S VST+W IGLI+GPA+GG+LAQP++KYP +F SLFGRF
Sbjct: 151 MKAYASEIFRDEYQATAMSAVSTAWGIGLIIGPALGGFLAQPADKYPNVFSQESLFGRFR 210
Query: 154 YFLPCLCISIFCFVILISCIWLPETLHKHATERNGDCKIGSLS-THLVDSEEFVKQHTGP 212
Y LPC IS F ++ + C ++PETLH H K+ SLS D E + P
Sbjct: 211 YALPCFTISAFALLVTVLCCFIPETLHNH--------KLDSLSHDDSYDILEAASHESSP 262
Query: 213 AKDK----------SLFKNWPLMSSIVLFCIVSFDDMAYTEIFSLWSESDKQFGGLNFSS 262
+ K SL KNWPLMSSI+++C++ D AY+EIF+LW+ S +++GGL++S+
Sbjct: 263 STGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAYSEIFALWANSPRKYGGLSYST 322
Query: 263 EDVGQVLAITGASILIYQTFIYPHIVKVLGIINTSRVAVILSMAILCSYPPMTYLSRPWL 322
+VG VLAI+G + +Q F+YP K+LG + +R A L + I SYP + LS L
Sbjct: 323 NEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGALMIPIQMSYPFIAGLSGLSL 382
Query: 323 SIVVNIASMLKNNFVVTINTCSFILQNNSVPQHQRATANGLATTLMSFFKAFAPAGAGIL 382
S+++N AS+L N V+ T ILQN +V Q QR ANG+A T MS FK PAGAGIL
Sbjct: 383 SLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANGIAMTAMSLFKTVGPAGAGIL 442
Query: 383 FSWAQKRQHAFFFPGDQMVXXXXXXXXXXXXXWTFKPFL 421
FSW+++R +A F PG MV TFKPFL
Sbjct: 443 FSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 51/71 (71%)
Query: 18 QYHEGCPACAVERSKAVNPGIPYMRFFHIWIIILVSCLPISSLFPFLYFMIRDLHVAKRV 77
YH+GCP C VE+ K + G PY+ +WII+L + LPISSL+PFLY+MI D VAK
Sbjct: 14 NYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLYYMIEDFGVAKTE 73
Query: 78 EDIGFYAGFVA 88
+DIGFYAGFV
Sbjct: 74 KDIGFYAGFVG 84
>AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810
Length = 809
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 16/75 (21%)
Query: 218 LFKNWPLMSSIVLFCIVSFDDMAYTEIFSLWSESDKQFGGLNFSSEDVGQVLAITGASIL 277
L NWPLMSSI+++CI+ + AY+EIF+LW+ S +++GGL I
Sbjct: 159 LLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGL----------------GIF 202
Query: 278 IYQTFIYPHIVKVLG 292
+Q F+YP ++LG
Sbjct: 203 FFQVFVYPLAKRLLG 217
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,224,218
Number of extensions: 376672
Number of successful extensions: 1020
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1015
Number of HSP's successfully gapped: 7
Length of query: 427
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 326
Effective length of database: 8,337,553
Effective search space: 2718042278
Effective search space used: 2718042278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)