BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0134900 Os11g0134900|AK069533
(473 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479 511 e-145
AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487 493 e-139
AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485 490 e-139
AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810 75 7e-14
>AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479
Length = 478
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/475 (52%), Positives = 331/475 (69%), Gaps = 6/475 (1%)
Query: 1 MSEEAPPSPVMRPVFYDGCPGCAMERKLESSQGIPYKEFFFVGITTIAXXXXXXXXXXXX 60
M+EE ++ F++ C GC +++ +G P+ E F V I +
Sbjct: 1 MAEEYAEC-LLEKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFL 59
Query: 61 YFMIEDLHVAKKEQDIGLYAGFLGASYMIGRCFASLFWGVVADRIGRKPIIKFSILSVVI 120
YFMI+D ++AKKE+DIG YAGF+G S+M+GR F S+ WG+VADR GRKP+I SVV+
Sbjct: 60 YFMIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVV 119
Query: 121 FNTLFGLSVKYWMAIATRFLLGALNGMLAPIKAYSIEVCRPEHQALGLSIVSTGWGVGLV 180
FNTLFGLS+ +WMAI TRF LG+ NG+L PIKAY++E+ R E+Q L LS VST WG+GL+
Sbjct: 120 FNTLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLI 179
Query: 181 VGPAIGGYFAQPAKQYPNVFSEKSIFGRFPYFLPCLCISLIALVVLISCIWLPETLHKHK 240
+GPAIGG+ AQPAKQYP++FS+ SIFG+FP+FLPCL IS+ A +V I +PETLH HK
Sbjct: 180 IGPAIGGFLAQPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHK 239
Query: 241 DTEGE-----IEMIDNSRSTLEEDSHKQKSLYKNWPLISSIIAYCVFTLHDTAYSEIFSL 295
+ E ++ D+ S + + + SL NWPLISSII YCVF+LHD AY+EIFSL
Sbjct: 240 FNDDESYDALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSL 299
Query: 296 WAVSEKRYGGLSFSSKEVGQVLAVAGAGLLVYQLFIYRSVHKFLGSINSSRIASALSVPI 355
WA S ++YGGL +S+ +VG VLA +G GLL++QL +Y + LG I +RI+ +L++ +
Sbjct: 300 WANSPRKYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVV 359
Query: 356 LATYPFMTHLSGFRLGIALYLGTILKGVLSITIITGTSLLQNNAVSQSQRGAANGISTTA 415
L+ YP + LSG L + + ++ K VL + ITG +LQN AV Q QRGAANGI+ TA
Sbjct: 360 LSCYPLIAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTA 419
Query: 416 MSFFKAIAPAGAGALFSWAQERQNEAFFPGDQMIFFILNVIELIGLALTFKPFLA 470
MS FKAI PA AG +FSW+++RQ AF PG QM+FFILNV+ +G+ LTFKPFLA
Sbjct: 420 MSLFKAIGPAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLA 474
>AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487
Length = 486
Score = 493 bits (1268), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/485 (52%), Positives = 332/485 (68%), Gaps = 20/485 (4%)
Query: 1 MSEEAPPSPVMRPVFYDGCPGCAMERKLESSQGIPYKEFFFVGITTIAXXXXXXXXXXXX 60
M+EE + + + ++DGCPGC +E+ + +G PY E FV I ++
Sbjct: 1 MAEEYKEALLEKQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFL 60
Query: 61 YFMIEDLHVAKKEQDIGLYAGFLGASYMIGRCFASLFWGVVADRIGRKPIIKFSILSVVI 120
Y+MIED VAK E+DIG YAGF+G S+M+GR S+FWG+VADR GRKPII +S+ I
Sbjct: 61 YYMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAI 120
Query: 121 FNTLFGLSVKYWMAIATRFLLGALNGMLAPIKAYSIEVCRPEHQALGLSIVSTGWGVGLV 180
FN LFGLS +WMAI TRFLLG+ N +L +KAY+ E+ R E+QA +S VST WG+GL+
Sbjct: 121 FNALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLI 180
Query: 181 VGPAIGGYFAQPAKQYPNVFSEKSIFGRFPYFLPCLCISLIALVVLISCIWLPETLHKHK 240
+GPA+GG+ AQPA +YPNVFS++S+FGRF Y LPC IS AL+V + C ++PETLH HK
Sbjct: 181 IGPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHK 240
Query: 241 -DTEGEIEMIDNSRSTLEEDSHK---------------QKSLYKNWPLISSIIAYCVFTL 284
D+ D+S LE SH+ +SL KNWPL+SSII YCV L
Sbjct: 241 LDSLSH----DDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCL 296
Query: 285 HDTAYSEIFSLWAVSEKRYGGLSFSSKEVGQVLAVAGAGLLVYQLFIYRSVHKFLGSINS 344
HDTAYSEIF+LWA S ++YGGLS+S+ EVG VLA++G GL +Q+F+Y K LG +
Sbjct: 297 HDTAYSEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLV 356
Query: 345 SRIASALSVPILATYPFMTHLSGFRLGIALYLGTILKGVLSITIITGTSLLQNNAVSQSQ 404
+R A AL +PI +YPF+ LSG L + L +IL VLS++ ITG +LQN AV QSQ
Sbjct: 357 TRYAGALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQ 416
Query: 405 RGAANGISTTAMSFFKAIAPAGAGALFSWAQERQNEAFFPGDQMIFFILNVIELIGLALT 464
RGAANGI+ TAMS FK + PAGAG LFSW++ R N AF PG M+FF+LNVI ++G+ALT
Sbjct: 417 RGAANGIAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALT 476
Query: 465 FKPFL 469
FKPFL
Sbjct: 477 FKPFL 481
>AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485
Length = 484
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/467 (50%), Positives = 329/467 (70%), Gaps = 13/467 (2%)
Query: 17 DGCPGCAMERKLESSQGIPYKEFFFVGITTIAXXXXXXXXXXXXYFMIEDLHVAKKEQDI 76
+ CPGC ++R + +G+PY F+ + ++ YFMI D H+AK+E+DI
Sbjct: 15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74
Query: 77 GLYAGFLGASYMIGRCFASLFWGVVADRIGRKPIIKFSILSVVIFNTLFGLSVKYWMAIA 136
G YAGF+G+S+MIGR S+FWG +ADR GRKPII SV+IFNTLFGLS +W+AI+
Sbjct: 75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134
Query: 137 TRFLLGALNGMLAPIKAYSIEVCRPEHQALGLSIVSTGWGVGLVVGPAIGGYFAQPAKQY 196
RFLLG N +L I+AY+ EV E+ AL LS+VST G+GL++GPAIGGY AQPA++Y
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194
Query: 197 PNVFSEKSIFGRFPYFLPCLCISLIALVVLISCIWLPETLH-KHKDTEGEI---EMIDNS 252
PN+FS+ S+FGRFPYFLP L IS+ A VLI+C WLPETLH + + +G + E+ D+
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254
Query: 253 RSTLEEDSHK---QKSLYKNWPLISSIIAYCVFTLHDTAYSEIFSLWAVSEKRYGGLSFS 309
D K + SL +N PL++ II YCVF+L + AY+EIFSLWAVS++ YGGLSFS
Sbjct: 255 SRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSFS 314
Query: 310 SKEVGQVLAVAGAGLLVYQLFIYRSVHKFLGSINSSRIASALSVPILATYPFMTHLSGFR 369
S++VG+VLA++G GLLV+QL +Y + K +G + R+++ L +P+L+ YP++ LSG
Sbjct: 315 SQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGVT 374
Query: 370 LGIALYLGTILKGVLSITIITGTSLLQNNAVSQSQRGAANGISTTAMSFFKAIAPAGAGA 429
L + + +I+K LSI+++TG ++ N AV Q+QRGAANGIS TAMS FK+ PAG G
Sbjct: 375 LHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGGV 434
Query: 430 LFSWAQERQNEAFFPG------DQMIFFILNVIELIGLALTFKPFLA 470
LFSWAQ+RQ+ F PG D+M+F +LN+++L+GL LTF P+++
Sbjct: 435 LFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYIS 481
>AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810
Length = 809
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 16/83 (19%)
Query: 269 NWPLISSIIAYCVFTLHDTAYSEIFSLWAVSEKRYGGLSFSSKEVGQVLAVAGAGLLVYQ 328
NWPL+SSII YC+ LH+TAYSEIF+LWA S +RYGGL G+ +Q
Sbjct: 162 NWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGL----------------GIFFFQ 205
Query: 329 LFIYRSVHKFLGSINSSRIASAL 351
+F+Y + LG + + A AL
Sbjct: 206 VFVYPLAKRLLGPVLVTHFAEAL 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,583,939
Number of extensions: 381114
Number of successful extensions: 1306
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1300
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 371
Effective length of database: 8,310,137
Effective search space: 3083060827
Effective search space used: 3083060827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)