BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0132400 Os11g0132400|AK059074
         (54 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29170.1  | chr3:11136240-11137542 REVERSE LENGTH=122           80   2e-16
AT2G19350.1  | chr2:8376329-8377097 FORWARD LENGTH=104             46   4e-06
AT4G29850.1  | chr4:14601818-14602874 REVERSE LENGTH=104           45   5e-06

>AT3G29170.1 | chr3:11136240-11137542 REVERSE LENGTH=122
          Length = 121

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 41/49 (83%)

Query: 6   GHMEGDNSQAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASIPDY 54
           GHMEGD+SQ Y LL LGIL FLPGFYETR+AYYS RGA GY FA+IP Y
Sbjct: 73  GHMEGDSSQGYALLVLGILTFLPGFYETRIAYYSWRGAEGYRFAAIPSY 121



>AT2G19350.1 | chr2:8376329-8377097 FORWARD LENGTH=104
          Length = 103

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 1   YFIFTGHMEGDNSQAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASIPD 53
           +F+    + GD       + LG L F+PGFY TR+AYY+ +G  G++F++IP 
Sbjct: 50  FFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPS 102



>AT4G29850.1 | chr4:14601818-14602874 REVERSE LENGTH=104
          Length = 103

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 1   YFIFTGHMEGDNSQAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASIP 52
           +F+    + GD       + LG L F+PGFY TR+AYY+ +G  G++F++IP
Sbjct: 50  FFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIP 101



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.147    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,240,285
Number of extensions: 37190
Number of successful extensions: 69
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 3
Length of query: 54
Length of database: 11,106,569
Length adjustment: 27
Effective length of query: 27
Effective length of database: 10,366,337
Effective search space: 279891099
Effective search space used: 279891099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)