BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0129600 Os11g0129600|J065107M04
(54 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03610.1 | chr3:869479-871687 FORWARD LENGTH=324 77 2e-15
AT3G60260.1 | chr3:22274303-22276839 FORWARD LENGTH=267 62 5e-11
AT2G44770.1 | chr2:18457817-18459886 FORWARD LENGTH=267 60 2e-10
AT1G67400.1 | chr1:25248099-25250664 REVERSE LENGTH=282 56 3e-09
AT1G03620.1 | chr1:904319-906013 REVERSE LENGTH=266 54 2e-08
>AT3G03610.1 | chr3:869479-871687 FORWARD LENGTH=324
Length = 323
Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%), Gaps = 3/47 (6%)
Query: 1 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR---FVSL 44
QDAL++LWRLAYP R+LPPLKS+LWKEMGWQ +DP+TDFR ++SL
Sbjct: 145 QDALRQLWRLAYPQRELPPLKSELWKEMGWQGTDPSTDFRGGGYISL 191
>AT3G60260.1 | chr3:22274303-22276839 FORWARD LENGTH=267
Length = 266
Score = 62.0 bits (149), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 1 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR---FVSL 44
Q+ALK+LW+LA+P +L + SD WKEMGWQ DP+TDFR F+SL
Sbjct: 88 QEALKDLWKLAFPEEELHGIVSDQWKEMGWQGKDPSTDFRGGGFISL 134
>AT2G44770.1 | chr2:18457817-18459886 FORWARD LENGTH=267
Length = 266
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 3/47 (6%)
Query: 1 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR---FVSL 44
Q+AL+ELW+L++P +L L S+ WKEMGWQ DP+TDFR F+SL
Sbjct: 88 QEALRELWKLSFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISL 134
>AT1G67400.1 | chr1:25248099-25250664 REVERSE LENGTH=282
Length = 281
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%)
Query: 1 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRFVSLI 45
QDAL+ LW YP +L L SD WK MGWQ DP+TDFR I
Sbjct: 104 QDALRALWSATYPDEKLQDLISDQWKNMGWQGKDPSTDFRGAGFI 148
>AT1G03620.1 | chr1:904319-906013 REVERSE LENGTH=266
Length = 265
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 1 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRFVSLI 45
Q++LK LW +A+P+ L L ++ WKEMGWQ +P+TDFR I
Sbjct: 86 QESLKALWNVAFPNVHLTGLVTEQWKEMGWQGPNPSTDFRGCGFI 130
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,379,054
Number of extensions: 40503
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 5
Length of query: 54
Length of database: 11,106,569
Length adjustment: 27
Effective length of query: 27
Effective length of database: 10,366,337
Effective search space: 279891099
Effective search space used: 279891099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)