BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0127800 Os11g0127800|AK059969
         (230 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21530.1  | chr2:9219372-9220464 FORWARD LENGTH=210            141   2e-34
AT5G67030.1  | chr5:26753745-26757090 REVERSE LENGTH=668           49   2e-06

>AT2G21530.1 | chr2:9219372-9220464 FORWARD LENGTH=210
          Length = 209

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 86/113 (76%), Gaps = 1/113 (0%)

Query: 90  ERWVLEPAGDGDWRHIGYRVARPGGFQIASEAAVTVGRVPEQADIVLSVATVSGTHARLE 149
           ERW+L+P GDGD RHIGY+VA P  F+I+S   VT+GR+PE+AD+V+ VATVSG HA + 
Sbjct: 85  ERWLLKPVGDGDTRHIGYKVAMPAPFEISS-GQVTIGRLPEKADVVIPVATVSGVHATIN 143

Query: 150 KKEGSLLVTDLESTNGTYINERRLTPGFPTPIDPGSLLIFGDIHLAMFRVSKM 202
             E +LLVTD+ STNGT+I ++RL PG   P  PG+ + FGD +LA+FRV K+
Sbjct: 144 TNEKNLLVTDMNSTNGTFIEDKRLIPGVAAPAFPGTRITFGDTNLAIFRVFKL 196



>AT5G67030.1 | chr5:26753745-26757090 REVERSE LENGTH=668
          Length = 667

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 123 VTVGRVPEQ----ADIVLSVATVSGTHARLEKKEGSLLVTDLESTNGTYINER-----RL 173
             VG  P+Q      IV+  + VS  HAR+  K+G+  + DL S +GTY+ +      R 
Sbjct: 558 CIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRA 617

Query: 174 TPGFPTPIDPGSLLIFGDIHLAMFRV 199
           TP FP       ++ FG    A FRV
Sbjct: 618 TPNFPARFRSSDIIEFGSDKKAAFRV 643



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,066,751
Number of extensions: 100949
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)