BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0127700 Os11g0127700|AK103742
         (312 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13410.1  | chr3:4362149-4364032 REVERSE LENGTH=322            206   1e-53
AT1G55546.1  | chr1:20743828-20745109 FORWARD LENGTH=132           79   3e-15

>AT3G13410.1 | chr3:4362149-4364032 REVERSE LENGTH=322
          Length = 321

 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 176/300 (58%), Gaps = 16/300 (5%)

Query: 23  PVMGPAFLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD 82
           P   PAFLW+P +   ++ E  E V+YQ +S K LV SV  +GGWSN +CS +   + VD
Sbjct: 28  PNTVPAFLWSP-HLQSANGELDEAVNYQVMSAKDLVGSVFTQGGWSNFLCSEKKLEQPVD 86

Query: 83  VAVLFLGSKLQSSDISKDKQADSTLVDTLKNSFASSEFSMAFPYIAMSDDDKLEKSLLSG 142
           VA++F+G +L SSD+S  + +D  LV+TL N F +S FS+AFPYIA  +++++E  LLSG
Sbjct: 87  VALVFIGRELLSSDVSSKRNSDPALVNTLNNLFTASNFSLAFPYIAAPEEERMENLLLSG 146

Query: 143 FAENCNNGFGDNHITYTDTCSVSE-DLNKHHNMDSI--HGLVASQTKKNPSGQTDLIVFC 199
             E C N  G ++I ++D+C V +  + K  ++ S   H L   +T+K   G+TDL+V C
Sbjct: 147 LKEACPNNVGVSNIVFSDSCFVEDGTIQKLSDLQSFKDHLLARRETRKE--GETDLVVLC 204

Query: 200 DGGFKDNTK-----SEGELLSELVTLLKKSGAKYTILYASQPFGLLENPSNLPLGRYLAE 254
             G + N++     SE E   ELV+ +++SG+KYT LY S P+      S   L R+LAE
Sbjct: 205 SEGSESNSQAGQSHSERESFLELVSSVEQSGSKYTALYVSDPYWY---TSYKTLQRFLAE 261

Query: 255 --KTNTTKPGRGKCDGECLVKSTLLEGSFXXXXXXXXXXXXXKCMMGIDTPSKFDAPPES 312
             K N+T      CD  C  KS+LLEG                CM GIDTP++F+ P +S
Sbjct: 262 TAKGNSTPEIATGCDELCKFKSSLLEGILVGIVFLLILISGLCCMAGIDTPTRFETPQDS 321



>AT1G55546.1 | chr1:20743828-20745109 FORWARD LENGTH=132
          Length = 131

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 3/90 (3%)

Query: 23  PVMGPAFLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSREDHAKSVD 82
           P   PAFLW+P +  +++ E    V+YQ +S K LV SV   GGWSN +CS +   + VD
Sbjct: 43  PSTVPAFLWSP-HLQYANGETD--VNYQVMSAKDLVDSVFTLGGWSNFLCSEKKLQQPVD 99

Query: 83  VAVLFLGSKLQSSDISKDKQADSTLVDTLK 112
           VA++F+G +L SSD+S ++ +D  LV+TLK
Sbjct: 100 VALVFIGRELLSSDVSSNQNSDPVLVNTLK 129



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,501,323
Number of extensions: 269246
Number of successful extensions: 519
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)