BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0124500 Os11g0124500|J075089N03
(151 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G57610.1 | chr1:21337449-21338412 REVERSE LENGTH=294 174 1e-44
AT1G09575.1 | chr1:3101851-3102832 REVERSE LENGTH=293 173 4e-44
AT2G23790.1 | chr2:10125692-10127455 REVERSE LENGTH=337 110 3e-25
AT4G36820.1 | chr4:17346889-17347994 FORWARD LENGTH=339 109 6e-25
AT5G66650.1 | chr5:26603204-26604257 REVERSE LENGTH=322 105 7e-24
AT5G42610.1 | chr5:17062507-17063934 FORWARD LENGTH=294 94 3e-20
>AT1G57610.1 | chr1:21337449-21338412 REVERSE LENGTH=294
Length = 293
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 102/136 (75%)
Query: 1 VVELVRRAVPLALSPENDSRXXXXXXXXXXXXXIDKLAHKQVRRILWSGLGFFMCQVGLF 60
VV+L+R+AVPL L+P+++ ID LAH+QVR+ILW GLG+ + Q+G+F
Sbjct: 124 VVDLIRKAVPLGLNPDDELIREEFDKMRSMKEEIDVLAHQQVRKILWGGLGYSVVQIGIF 183
Query: 61 FRLTFWEFSWDVMEPIAFFTTASGLLVGYAYFLITSRDPTYEDFMERLYLSRHRKLCAKN 120
RLTFWEFSWDVMEPI FFTTA+G++VGYAYFL+TSRDPTY+DFM+RL+LSR RKL +
Sbjct: 184 VRLTFWEFSWDVMEPITFFTTATGIIVGYAYFLMTSRDPTYQDFMKRLFLSRQRKLLKSH 243
Query: 121 SFDMAKYLELQKHCKC 136
FD ++ EL+ K
Sbjct: 244 KFDAERFKELENKWKI 259
>AT1G09575.1 | chr1:3101851-3102832 REVERSE LENGTH=293
Length = 292
Score = 173 bits (438), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 102/145 (70%)
Query: 1 VVELVRRAVPLALSPENDSRXXXXXXXXXXXXXIDKLAHKQVRRILWSGLGFFMCQVGLF 60
VV+L+RRA+PL +PE D ID LAH+QVR+ILW GL M Q+GLF
Sbjct: 128 VVDLIRRAMPLDQNPEEDQIKEEFNKLRIMKEEIDVLAHRQVRKILWCGLATSMVQIGLF 187
Query: 61 FRLTFWEFSWDVMEPIAFFTTASGLLVGYAYFLITSRDPTYEDFMERLYLSRHRKLCAKN 120
FRLTFWEFSWDVMEPI FF TA+G++VGYAYFL+TSRDPTY+DFM+RL+LSR RKL +
Sbjct: 188 FRLTFWEFSWDVMEPITFFATATGIIVGYAYFLMTSRDPTYQDFMKRLFLSRQRKLLKSH 247
Query: 121 SFDMAKYLELQKHCKCPLEGHYSHS 145
FD ++ EL++ K H + S
Sbjct: 248 KFDCERFKELERLFKMTSSCHAAAS 272
>AT2G23790.1 | chr2:10125692-10127455 REVERSE LENGTH=337
Length = 336
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 17 NDSRXXXXXXXXXXXXXIDKLAHKQVRRILWSGLGFFMCQVGLFFRLTFWEFSWDVMEPI 76
ND R ID AH VR+ LW+GLG+ + Q F RLTFWE SWDVMEPI
Sbjct: 202 NDPRRIEFKELEAEKAVIDVKAHTLVRKELWAGLGYLILQTAGFMRLTFWELSWDVMEPI 261
Query: 77 AFFTTASGLLVGYAYFLITSRDPTYEDFMERLYLSRHRKLCAKNSFDMAKYLELQK-HCK 135
F+ T+ + GYA+FL TS++P++E F + + ++ RKL + FD+ +Y EL+K C
Sbjct: 262 CFYVTSVYFMAGYAFFLRTSKEPSFEGFYQSRFEAKQRKLMNEYEFDLERYNELKKLFCS 321
Query: 136 CP 137
P
Sbjct: 322 KP 323
>AT4G36820.1 | chr4:17346889-17347994 FORWARD LENGTH=339
Length = 338
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%)
Query: 17 NDSRXXXXXXXXXXXXXIDKLAHKQVRRILWSGLGFFMCQVGLFFRLTFWEFSWDVMEPI 76
ND R ID+ AH VRR LW+GLG+ + Q F RLTFW+ +WDVMEPI
Sbjct: 204 NDPRRKELNELEAIKTVIDQKAHSLVRRELWAGLGYLIIQTAGFMRLTFWDLTWDVMEPI 263
Query: 77 AFFTTASGLLVGYAYFLITSRDPTYEDFMERLYLSRHRKLCAKNSFDMAKYLELQK 132
F+ ++ + GY +FL TSR+P+++ F + + ++ RKL FD+ +Y EL+K
Sbjct: 264 CFYVSSVYFMAGYTFFLKTSREPSFQGFYQSRFEAKQRKLMQSEDFDVGRYDELKK 319
>AT5G66650.1 | chr5:26603204-26604257 REVERSE LENGTH=322
Length = 321
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%)
Query: 34 IDKLAHKQVRRILWSGLGFFMCQVGLFFRLTFWEFSWDVMEPIAFFTTASGLLVGYAYFL 93
IDK A VR+ LW+GLG M Q FFRLTFWE SWDVMEPI F+ T++ + GYA+FL
Sbjct: 211 IDKRADDLVRKELWAGLGLIMAQTVGFFRLTFWELSWDVMEPICFYVTSTYFMAGYAFFL 270
Query: 94 ITSRDPTYEDFMERLYLSRHRKLCAKNSFDMAKYLELQK 132
TS++P++E F + + ++ ++L FD+ ++ +LQK
Sbjct: 271 RTSKEPSFEGFYKSRFETKQKRLIKMLDFDIDRFTKLQK 309
>AT5G42610.1 | chr5:17062507-17063934 FORWARD LENGTH=294
Length = 293
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%)
Query: 17 NDSRXXXXXXXXXXXXXIDKLAHKQVRRILWSGLGFFMCQVGLFFRLTFWEFSWDVMEPI 76
ND R ID A + V+ L+ GLGF Q F RLTFWE SWDVMEPI
Sbjct: 165 NDPRKEELVQLATTKKSIDIEARRIVQAELYCGLGFLAVQTIGFMRLTFWELSWDVMEPI 224
Query: 77 AFFTTASGLLVGYAYFLITSRDPTYEDFMERLYLSRHRKLCAKNSFDMAKYLELQ 131
FF T ++GY +FL TS +P++E + + ++ +KL ++ FD +Y EL
Sbjct: 225 CFFVTTIHFILGYIFFLRTSTEPSFEGLFRQRFKTKQKKLMERHGFDFLRYNELN 279
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.141 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,109,575
Number of extensions: 113093
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 6
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)