BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0118800 Os11g0118800|AK120973
(372 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01970.1 | chr5:373014-374651 REVERSE LENGTH=352 222 2e-58
AT2G30530.1 | chr2:13009071-13010867 FORWARD LENGTH=372 199 2e-51
AT1G30050.1 | chr1:10543177-10544418 FORWARD LENGTH=390 184 6e-47
AT4G02800.1 | chr4:1250126-1251478 FORWARD LENGTH=334 119 3e-27
>AT5G01970.1 | chr5:373014-374651 REVERSE LENGTH=352
Length = 351
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/267 (49%), Positives = 172/267 (64%), Gaps = 24/267 (8%)
Query: 40 EPKLGLWETLARKAKGILDEDGVAHKSDEYTKEKTPRKFDSSTGAQESQSRWSF---ENH 96
EPK GLW +A+KAK ++++D + D ST A SQSR+S+ E
Sbjct: 54 EPK-GLWGVIAQKAKSVIEDD---------------KSSDRSTTA--SQSRFSYLSDEGF 95
Query: 97 SKTGDTGSRTRSEALAASVNQLGGRIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQANS 156
K + R + L +S+NQ+G A E+G T+V+NKT++II+ET+K+Q RR+
Sbjct: 96 KKMDNPKLRRGLDKLTSSLNQIGDTFEKAFEDGRTLVENKTADIIQETRKLQTRRRGTGG 155
Query: 157 NSYVPNLAFDTLRPPNLSNDQA---ETAAQETQLKASRDVANAMAAKAKLVLRELKTVKA 213
N ++ S +Q ETQLKASRDVA A AAKAKL+LRELKTVKA
Sbjct: 156 EDENQNQSYGVSSSWKKSPEQPMQLNHIEHETQLKASRDVAMATAAKAKLLLRELKTVKA 215
Query: 214 DLAFAKQRCAQLEEENKFLREAKQKGSKTEEDDDLIRVQLETLLAEKSRLAQENSMYARE 273
DLAFAK+RCAQLEEENK LRE+ ++ D+DLIR+QLE+LLAEK+RLA ENS+YARE
Sbjct: 216 DLAFAKERCAQLEEENKHLRESHREKGSNPADEDLIRLQLESLLAEKARLAHENSVYARE 275
Query: 274 NRFLREIVDFHQFTTHDVAPLDDGDME 300
NRFLREIV++HQ T DV +D+G E
Sbjct: 276 NRFLREIVEYHQLTMQDVVYIDEGSEE 302
>AT2G30530.1 | chr2:13009071-13010867 FORWARD LENGTH=372
Length = 371
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 175/266 (65%), Gaps = 30/266 (11%)
Query: 35 IKSMNEPKLGLWETLARKAKGILDEDGVAHKSDEYTKEKTPRKFDSST-GAQESQSRWSF 93
+KS+NEPK G W +LA KAK LDED D ++P++ + S A S ++ +
Sbjct: 98 MKSLNEPKRGFWGSLASKAKAFLDED------DPNQLPQSPKRMEQSIPSATTSGTKEAG 151
Query: 94 ENHSKTGDTGSRTRSEALAASVNQLGGRIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQ 153
+ K+ + + R +A+ +S+N +GG I +EEG+T V+N+T+ II+ET+K +I++K
Sbjct: 152 QTGRKSENPSLQRRLDAITSSLNYIGGTIGTVVEEGITAVENRTAGIIQETRK-KIKKK- 209
Query: 154 ANSNSYVPNLAFDTLRPPNLSNDQAETAAQ---ETQLKASRDVANAMAAKAKLVLRELKT 210
P+L+ +Q Q E QLKASRDVA AMAAKAKL+LRELK
Sbjct: 210 -----------------PSLTRNQQNPEIQADLEIQLKASRDVAMAMAAKAKLLLRELKM 252
Query: 211 VKADLAFAKQRCAQLEEENKFLREAKQKGSKTEEDDDLIRVQLETLLAEKSRLAQENSMY 270
VK+DLAFAKQRCAQLEEENK LRE + S+T +DDDL+R+QLETLLAEK+RLA ENS+Y
Sbjct: 253 VKSDLAFAKQRCAQLEEENKVLRENRSGDSQT-DDDDLVRLQLETLLAEKARLAHENSIY 311
Query: 271 ARENRFLREIVDFHQFTTHDVAPLDD 296
REN +LR +V++HQ T DV D+
Sbjct: 312 TRENLYLRGVVEYHQLTMQDVVYFDE 337
>AT1G30050.1 | chr1:10543177-10544418 FORWARD LENGTH=390
Length = 389
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 151/260 (58%), Gaps = 46/260 (17%)
Query: 44 GLWETLARKAKGILDEDGVAHKSDEYTKEKTPRKFDSSTGAQESQSRWSFENHSKTGDTG 103
G W LA+KAK IL+++ + + + FE + T
Sbjct: 77 GFWGILAQKAKSILEDEEEQQQQQQQQNDVI------------------FEPSNPT---- 114
Query: 104 SRTRSEALAASVNQLGGRIRDALEEGLTIVDNKTSNIIEETKKIQIRRKQA------NSN 157
R + + S+N +G A EEG TIV + QIRRK + N+N
Sbjct: 115 IRKSIDKITTSLNHIGDSFEKAFEEGRTIVAS------------QIRRKGSDLIDSDNNN 162
Query: 158 SYVPNLAFDTLRPPNLSNDQAETAAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAF 217
+ + + +P N +E+QLKASRDVA A AAKAKL+LRELKTVKADLAF
Sbjct: 163 YHQSSGSSSPWQPLTQPN------PRESQLKASRDVAMATAAKAKLLLRELKTVKADLAF 216
Query: 218 AKQRCAQLEEENKFLREAKQKGSKTEEDDDLIRVQLETLLAEKSRLAQENSMYARENRFL 277
AK+RC+QLEEENK LR+ + KG+ DDDLIR+QLETLLAEK+RLA ENS+YARENRFL
Sbjct: 217 AKERCSQLEEENKRLRDNRDKGNNNPADDDLIRLQLETLLAEKARLAHENSIYARENRFL 276
Query: 278 REIVDFHQFTTHDVAPLDDG 297
REIV++HQ T DV +D+G
Sbjct: 277 REIVEYHQLTMQDVVYIDEG 296
>AT4G02800.1 | chr4:1250126-1251478 FORWARD LENGTH=334
Length = 333
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 89/120 (74%), Gaps = 1/120 (0%)
Query: 174 SNDQAETAAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQRCAQLEEENKFLR 233
SN++ + + +K ++++A +MAAKA + RELKT+K+DL+F ++RC LEEENK LR
Sbjct: 165 SNEEEKRPKERKIMKKAKNIAISMAAKANSLARELKTIKSDLSFIQERCGLLEEENKRLR 224
Query: 234 EAKQKGSKTEEDDDLIRVQLETLLAEKSRLAQENSMYARENRFLREIVDFHQFTTHDVAP 293
+ KG + EE DDL+R+QLE LLAEK+RLA EN+ REN+ L ++V++HQ T+ D++P
Sbjct: 225 DGFVKGVRPEE-DDLVRLQLEVLLAEKARLANENANLVRENQCLHQMVEYHQITSQDLSP 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.126 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,803,847
Number of extensions: 274171
Number of successful extensions: 1022
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,364,969
Effective search space: 2275271568
Effective search space used: 2275271568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)