BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0118600 Os11g0118600|AK121697
(312 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08600.1 | chr3:2612646-2613596 FORWARD LENGTH=317 234 5e-62
AT4G22900.1 | chr4:12010221-12011252 FORWARD LENGTH=344 110 1e-24
AT4G11950.1 | chr4:7173276-7174259 REVERSE LENGTH=328 107 9e-24
AT1G62981.1 | chr1:23333793-23334824 FORWARD LENGTH=344 100 8e-22
AT4G23720.1 | chr4:12358707-12359648 FORWARD LENGTH=314 94 1e-19
AT4G01140.1 | chr4:491012-491932 REVERSE LENGTH=307 92 3e-19
>AT3G08600.1 | chr3:2612646-2613596 FORWARD LENGTH=317
Length = 316
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 31 LDAMLQDHAYRAFVHPHTGIVYNAT-VPANLTGVALSAVRLRSGSLRRKGFSDYFDFTVP 89
LDA+LQD+++RA + P TGI+Y AT VP+NLTG+ L+A+RLRSGS R++G + + +F++P
Sbjct: 37 LDALLQDYSFRALLRPRTGILYEATTVPSNLTGIKLAAMRLRSGSFRKRGVTPFNEFSIP 96
Query: 90 TGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAANLSAVGLQELSFV 149
+G++V+PYV R+VLVY NL N+S YYPL GY Y++PVLGLL YDA NLSA+ L +L
Sbjct: 97 SGVIVKPYVTRLVLVYQNLANFSHLYYPLSGYDYVAPVLGLLAYDAKNLSALNLPQLDLR 156
Query: 150 ASGSPISINFSDVRSVPAGGPAPRCVWFDLDGVPQFRD-LEASNVCSTYRRGHFSIVVNS 208
S PI I+FSD+ +P G A +CV FD G F D ++ N C T +GHFS+VV S
Sbjct: 157 VSNDPIRIDFSDLERIPQGSSA-KCVRFDSKGEASFSDSIQPGNTCETEHQGHFSVVVKS 215
Query: 209 SAIPPGPVPSGNXXXXXXXXXGRSKGSSKGWKIXXXXXXXXXXXXXXXXXXXXXXRYKRD 268
A P P G S +SK W I YK+
Sbjct: 216 VASAPSLAPPG---IESKKKKKSSDSNSKTWIIVGSVVGGLILLGLLLFLVLRCRNYKKQ 272
Query: 269 KKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEYVA 312
+K+ ME+ ETGE LRM QVG ++AP A TRTQP++E+EY A
Sbjct: 273 EKMREMERAGETGEALRMTQVGETRAPTATTTRTQPMLETEYAA 316
>AT4G22900.1 | chr4:12010221-12011252 FORWARD LENGTH=344
Length = 343
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 141/311 (45%), Gaps = 25/311 (8%)
Query: 22 AQASSPARALDAMLQDHAYRAF-VHPHTGIVYNATVPANLTGVALSAVRLRSGSLRRKGF 80
+Q LD M++D+ R F ++ +TG+ +P+N +G+ + V+LR GSLRR G
Sbjct: 22 SQLIQSTHLLDLMIRDYTIRNFKLNFNTGVTQKIYLPSNFSGIDIDTVKLRCGSLRRYG- 80
Query: 81 SDYFDFTVPTGIVVQPYVERVVLVYHNLG-NWSDHY---YPLPGYTY--LSPVLGLLLYD 134
+ +F + +G+ V+P ERV+L+ N G NWS Y Y L GY Y +SPVLGLL Y+
Sbjct: 81 AKIGEFHIGSGLTVEPCPERVMLIRQNFGSNWSSIYSTGYNLSGYNYKLVSPVLGLLAYN 140
Query: 135 AANLSAVGLQ--ELSFVASG-SPISINFSDVRSVPAGGPAPR-------CVWFDLDGVPQ 184
AN V E++ V + +PI I+F ++ P P C F +
Sbjct: 141 -ANPDGVARNPYEVNVVGTDQNPILIDFLINKATNNTSPNPTKKNSSVLCACFTSNSNTT 199
Query: 185 FRDLEASNVCSTYRRGHFSIVVNSSAIPPG----PVPSGNXXXXXXXXXGRSKGSSKGWK 240
F + + VC R+GH+++V+ + A G G G WK
Sbjct: 200 FSEQVSPYVCKGTRQGHYALVMKTEAQKDDHEGGGSSGGVVASSTEVNGGNGGGKLSRWK 259
Query: 241 IXXXXXXXXXXXXXXXXXXXXXXRYKRDKKL--ELMEQNAETGETLRMAQVGRSQAPVAL 298
+ K KK E ME+ A E L+++ VG +AP A
Sbjct: 260 VAVGSVIGSGIGAILLGMLVVAMLVKGKKKAMREEMERRAYEEEALQVSMVGHVRAPTAP 319
Query: 299 GTRTQPVIESE 309
GTRT P I +
Sbjct: 320 GTRTLPRISDD 330
>AT4G11950.1 | chr4:7173276-7174259 REVERSE LENGTH=328
Length = 327
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 146/316 (46%), Gaps = 41/316 (12%)
Query: 22 AQASSPARALDAMLQDHAYRAF-VHPHTGIVYNATVPANLTGVALSAVRLRSGSLRRKGF 80
+Q A LD M++D+ R F +H TG + +P+N + + ++ + R GSLRR G
Sbjct: 20 SQTIESAHFLDLMIRDYTIRNFNIHFKTGAIQKVHLPSNFSSIDIATAKFRCGSLRRHG- 78
Query: 81 SDYFDFTVPTGIVVQPYVERVVLVYHNLG-NWSDHYYP----LPGYTY--LSPVLGLLLY 133
+ +F + G+ V+P VERV+LV NLG NWS + Y L GY Y +SPVLGLL Y
Sbjct: 79 ARIGEFHLGPGLTVEPCVERVILVRQNLGFNWSSYIYSTGYNLTGYKYRLVSPVLGLLAY 138
Query: 134 DAA-NLSAVGLQELSFVAS-GSPISINFSDVRSVPAGGPAPR--------CVWFDLDGVP 183
++ + AV E++ + + +PI I F + S +G P P C F +G
Sbjct: 139 NSNPDGVAVNPYEVNVMGTEQNPILIKF--LSSEASGSPKPNTKKNSSVLCACFTSNGNI 196
Query: 184 QFRDLEASNVCSTYRRGHFSIVV--------NSSAIPPGPVPSGNXXXXXXXXXGRSKGS 235
FR+ ++ VC R+GH+++V+ S+ + P P+ G
Sbjct: 197 TFREQVSAYVCLGTRQGHYALVIRAHDSGGGGSTVVTPSSSPA---------LTDGGGGK 247
Query: 236 SKGWKIXXXXXXXXXXXXXXXXXXXXXXRYKRDKKL--ELMEQNAETGETLRMAQVGRSQ 293
WK+ K KK E ME+ A E L+++ VG +
Sbjct: 248 LSRWKVAVGSVIGSIIGAFLLGLLVVAMVVKGKKKAMREEMERRAYEEEALQVSMVGHVR 307
Query: 294 A-PVALGTRTQPVIES 308
A P A +RT P E+
Sbjct: 308 ANPNASRSRTIPRFEN 323
>AT1G62981.1 | chr1:23333793-23334824 FORWARD LENGTH=344
Length = 343
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 106/214 (49%), Gaps = 30/214 (14%)
Query: 17 TSRVAAQASSPARALDAMLQDHAYRAFVHPH----TGIVYNATVPANLTGVALSAVRLRS 72
T+ + +R LD +L+D+ F + H TG++ +P++ +G+ L AVR R
Sbjct: 32 TTTTQEALNESSRLLDLILRDYTLNFFKNQHYSIKTGVIRRVHLPSDYSGIKLDAVRFRC 91
Query: 73 GSLRRKGFSDYFDFTVPTGIVVQPYVERVVLVYHNLGN-WSDHYYP---LPGYTYLSPVL 128
GSLRR G + +F + G +++P ER+++V +LG+ WSD YY L GY +SPVL
Sbjct: 92 GSLRRYG-AKIEEFNIGVGAILEPCGERLLVVRQSLGSKWSDIYYKNYDLSGYRLVSPVL 150
Query: 129 GLLLYDAANLSAVGLQ-------ELSFVASGSPISINFSDVRSVPAGGPA---------P 172
GLL Y+A N +G L + P +++F +V GP+ P
Sbjct: 151 GLLAYNALNDVVLGNNVSSSYQISLLLARTKDPSNVDFGNV-----SGPSVVERTFLNKP 205
Query: 173 RCVWFDLDGVPQFRDLEASNVCSTYRRGHFSIVV 206
C F+LDG VC+ GHF +VV
Sbjct: 206 MCATFELDGKVTLAAEVKPFVCAVKTNGHFGLVV 239
>AT4G23720.1 | chr4:12358707-12359648 FORWARD LENGTH=314
Length = 313
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 128/293 (43%), Gaps = 39/293 (13%)
Query: 30 ALDAMLQDHAYRAFV-HPHTGIVYNATVPANLTGVALSAVRLRSGSLRRKGFSDYFDFTV 88
+L L++ A + HTG +Y A +P NL+G+ +S VRL SL G + + + +
Sbjct: 44 SLSQSLENFALKTLTTQHHTGALYRAILPENLSGIEVSVVRLTGKSLWNSG-AKFSNVLI 102
Query: 89 PTGIVVQPYVERVVLVYHNLGNWSDHYYPLPGYTYLSPVLGLLLYDAANLSAVGLQELSF 148
P V P RVV+VY NLGNWS+H+Y +PGY ++ VLG + D ++ V +E+
Sbjct: 103 PERSVSVPPARRVVIVYQNLGNWSNHWYTVPGYRLITSVLGFKVLDVSDQDNV--KEI-I 159
Query: 149 VASGSPISINFSDV--RSVPAGGPAPRCVWFDLDGVPQFRDLEASN--------VCSTYR 198
+ +P+ ++F D+ RCV F Q +D EA++ VC
Sbjct: 160 LKMKNPVEVSFRDLPKERDEEMLSRVRCVSFK----AQTKDEEATHISRMVIPGVCYGSS 215
Query: 199 RGHFSIVVNSSAIPPGPVPSGNXXXXXXXXXGRSKGSSKGWKIXXXXXXXXXXXXXXXXX 258
G +S+ I P N G G+ +
Sbjct: 216 HGDYSV------IEPLENDKKNVESWSTWWWLWIVGFVLGFGL-------------LGFL 256
Query: 259 XXXXXRYKRDKKLE-LMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIESEY 310
R R KK++ +ME++A GE G S+ P A TRT P +ES +
Sbjct: 257 CTMGIRVSRAKKIQVMMERDANDGEVFESRWFGGSKMPSAAVTRTLPELESGF 309
>AT4G01140.1 | chr4:491012-491932 REVERSE LENGTH=307
Length = 306
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 127/285 (44%), Gaps = 32/285 (11%)
Query: 31 LDAMLQDHAYRAFVHPHTGIVYNATVPANLTGVALSAVRLRSGSLRRKGFSDYFDFTVPT 90
LD +++ +A RA HTG +Y+ ++P+NL+ + S V +R+ RKG +++ +P
Sbjct: 34 LDDLIRSYAARATTRRHTGSLYDVSLPSNLSDIKASVVTVRNSIFWRKG-TNFSGVLIPP 92
Query: 91 GIVVQPYVERVVLVYHNLG-NWSDHYYPLP-GYTYLSPVLGLLLYDAANLSAVGLQELSF 148
+ PY +R+ V+ + G N S Y+ L Y+++SPV+G YDA N + + LS
Sbjct: 93 MVKTSPYAKRIAFVFESFGDNSSSVYFRLADNYSFVSPVIGFTGYDATNTNDLKKLNLS- 151
Query: 149 VASGSPISINFSDVRSVPAGGPAPRCVWFDLDGV-----PQFRDLEASNVCSTYRRGHFS 203
+ PI I F S +C+ F +G+ R+ E + +T GH++
Sbjct: 152 IKRDKPILIKFDPHAS--RDRSKVKCIVFGDNGLLLNISNTIRNYECA---TTNSHGHYA 206
Query: 204 IVV-NSSAIPPGPVPSGNXXXXXXXXXGRSKGSSKGWKIXXXXXXXXXXXXXXXXXXXXX 262
+VV N + P P R+ W I
Sbjct: 207 LVVLNQEKVKPKHEP---------VLVRRN-----WWWIVLTGIGVSVIVVVVIIVSVKL 252
Query: 263 XRYKRDKKLELMEQNAETGETLRMAQVGRSQAPVALGTRTQPVIE 307
R KR L ME+ +E ET+ +GRS+ P A RTQP +E
Sbjct: 253 VRKKR---LRDMERESEKSETIGNVWIGRSRMPAATMVRTQPCLE 294
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,729,693
Number of extensions: 230404
Number of successful extensions: 384
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)