BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0116200 Os11g0116200|AK060108
(132 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 98 1e-21
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 87 3e-18
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 87 4e-18
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 85 1e-17
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 80 4e-16
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 79 7e-16
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 78 1e-15
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 75 8e-15
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 70 3e-13
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 67 3e-12
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 59 7e-10
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
I+CG V ++APC +Y++ + CC GVK LN+ A+TT DRQ ACRC++S A SI
Sbjct: 25 ISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISG 84
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
LN +G+PGKCGV++ +PIS+ST+CNN
Sbjct: 85 LNPSLASGLPGKCGVSIPYPISMSTNCNN 113
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSI-K 86
++CG V +A CI+Y+T + LTQGCCNGV L N A TT DRQ ACRCL+S A ++
Sbjct: 27 MSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGP 86
Query: 87 SLNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN AG+P C VN+ + IS ST+CN
Sbjct: 87 GLNTARAAGLPSACKVNIPYKISASTNCN 115
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCG V S+++PC+ Y++ + CC GVK LN A+TT DRQ ACRCL+S A K
Sbjct: 25 ITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA---KG 81
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDC 114
+N +G+PGKCGV++ +PIS ST+C
Sbjct: 82 VNPSLASGLPGKCGVSIPYPISTSTNC 108
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 54/89 (60%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
I CG V S +A C++Y+T L CC GVK L A+TT DR+ C CLK IK
Sbjct: 26 IQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKG 85
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
LN VA +P CGV++ +PIS ST+C++
Sbjct: 86 LNTDLVAALPTTCGVSIPYPISFSTNCDS 114
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
I C QV +A C+ Y+ + CCNG+ L AA ADRQ AC CLKS+A +I
Sbjct: 29 IACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPG 88
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
+N +P KCGVN+G P S + DCN
Sbjct: 89 INDDFAKQLPAKCGVNIGVPFSKTVDCN 116
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
I+CG V ++ C +Y+T + +GCC+GV+ LN+ ARTT DRQ ACRC++ A ++ S
Sbjct: 27 ISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS 86
Query: 88 -LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN G A +PG C V + +PIS T+CN
Sbjct: 87 RLNAGRAARLPGACRVRISYPISARTNCN 115
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
++CG V S +A CI YV + CC+GVK LN+ A+TT DRQ AC C++ A ++ S
Sbjct: 27 LSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS 86
Query: 88 -LNLGTVAGVPGKCGVNVGFPISLSTDC 114
LN G AG+P CGVN+ + IS ST+C
Sbjct: 87 GLNAGRAAGIPKACGVNIPYKISTSTNC 114
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAG--SI 85
I+C V + + PC+ YV + CCNG++ L+ A + +D+Q CRC+KS+ G S
Sbjct: 24 ISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSY 83
Query: 86 KSLNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
S+ L A +PGKCGV + + I ST+CN+
Sbjct: 84 SSIYLKKAAALPGKCGVKLPYKIDPSTNCNS 114
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAG--SI 85
++C V + + PC+SYVT + CCNG+ L + A+T+ DRQ CRC+KS G ++
Sbjct: 21 VSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTL 80
Query: 86 KSLNLGTVAGVPGKCGVNVGFPISLSTDCNNQ 117
+ +P KCGV++ + S STDC+++
Sbjct: 81 SPRTIQNALELPSKCGVDLPYKFSPSTDCDSE 112
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQG--CCNGVKGLNNAARTTADRQAACRCLKSLAGSI 85
++CG+V S + PC Y+T + G CCNGV+ LN TT DR+ ACRC+K+ A ++
Sbjct: 27 LSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNV 86
Query: 86 -KSLNLGTVAGVPGKCGVNVGFP--ISLSTDCNNQPC 119
LN AG+P +CG+ + + I +T CN C
Sbjct: 87 GPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCNTYIC 123
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRSG-LTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIK 86
I+C V + PC+SY+T SG + CC+GVK L A T+AD++AAC+C+KS+A S+
Sbjct: 26 ISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV- 84
Query: 87 SLNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
++ + CG ++ S + DC
Sbjct: 85 TVKPELAQALASNCGASLPVDASPTVDCTT 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,279,594
Number of extensions: 73068
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 11
Length of query: 132
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 45
Effective length of database: 8,721,377
Effective search space: 392461965
Effective search space used: 392461965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)