BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0116000 Os11g0116000|AK061182
(118 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116 100 3e-22
AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113 94 2e-20
AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120 89 4e-19
AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119 88 8e-19
AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119 86 5e-18
AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119 86 5e-18
AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120 85 8e-18
AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117 83 4e-17
AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118 76 3e-15
AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124 73 3e-14
AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117 64 2e-11
>AT5G59320.1 | chr5:23929051-23929492 FORWARD LENGTH=116
Length = 115
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 68/92 (73%)
Query: 26 AAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTI 85
AAI+CG V ++APC +Y++ G + CC GVK LN+ A+TT DRQ ACRC+++ A +I
Sbjct: 23 AAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSI 82
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
LN A+G+PGKCGV++ +PIS+ST+C+ +
Sbjct: 83 SGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114
>AT5G59310.1 | chr5:23925296-23925772 REVERSE LENGTH=113
Length = 112
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 26 AAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTI 85
AAITCG V S+++PC+ Y++ G + CC GVK LN A+TT DRQ ACRCL++ A
Sbjct: 23 AAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAA--- 79
Query: 86 KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
K +N A+G+PGKCGV++ +PIS ST+C+ +
Sbjct: 80 KGVNPSLASGLPGKCGVSIPYPISTSTNCATI 111
>AT3G51590.1 | chr3:19135828-19136654 REVERSE LENGTH=120
Length = 119
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 55/94 (58%)
Query: 25 SAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGT 84
+ I CG V S +A C++Y+T G L CC GVK L A+TT DR+ C CLK
Sbjct: 23 ESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKE 82
Query: 85 IKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
IK LN A +P CGV++ +PIS ST+C +S
Sbjct: 83 IKGLNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116
>AT2G38530.1 | chr2:16128481-16128948 FORWARD LENGTH=119
Length = 118
Score = 88.2 bits (217), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 24 ASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAG 83
A+A ++CG V +A CI+Y+T LTQGCCNGV L N A TT DRQ ACRCL++ A
Sbjct: 23 ANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAK 82
Query: 84 TI-KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
+ LN AAG+P C VN+ + IS ST+C+ V
Sbjct: 83 AVGPGLNTARAAGLPSACKVNIPYKISASTNCNTV 117
>AT2G38540.1 | chr2:16130418-16130893 FORWARD LENGTH=119
Length = 118
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 24 ASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAG 83
++AA++CG V S +A CI YV G + CC+GVK LN+ A+TT DRQ AC C++ A
Sbjct: 23 SNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAAR 82
Query: 84 TIKS-LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
+ S LN G AAGIP CGVN+ + IS ST+C V
Sbjct: 83 ALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117
>AT3G51600.1 | chr3:19138661-19139124 REVERSE LENGTH=119
Length = 118
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 24 ASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAG 83
+ AAI+CG V ++ C +Y+T G + +GCC+GV+ LN+ ARTT DRQ ACRC++ A
Sbjct: 23 SEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAAR 82
Query: 84 TIKS-LNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
+ S LN G AA +PG C V + +PIS T+C+ V
Sbjct: 83 ALGSRLNAGRAARLPGACRVRISYPISARTNCNTV 117
>AT4G33355.1 | chr4:16067097-16067568 FORWARD LENGTH=120
Length = 119
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 55/92 (59%)
Query: 27 AITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIK 86
AI C QV +A C+ Y+ G + CCNG+ L AA ADRQ AC CLK++A TI
Sbjct: 28 AIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIP 87
Query: 87 SLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS 118
+N A +P KCGVN+G P S + DC+ ++
Sbjct: 88 GINDDFAKQLPAKCGVNIGVPFSKTVDCNSIN 119
>AT5G01870.1 | chr5:337234-337678 FORWARD LENGTH=117
Length = 116
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 23 GASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLA 82
G+ AAI+C V + + PC+ YV G + CCNG++ L+ A + +D+Q CRC+K++
Sbjct: 19 GSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVV 78
Query: 83 GTI--KSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
G + S+ L AA +PGKCGV + + I ST+C+ +
Sbjct: 79 GRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115
>AT3G08770.2 | chr3:2664330-2664784 REVERSE LENGTH=118
Length = 117
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 25 SAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAG- 83
AA++C V + + PC+SYVT G + CCNG+ L + A+T+ DRQ CRC+K+ G
Sbjct: 18 EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77
Query: 84 -TIKSLNLGAAAGIPGKCGVNVGFPISLSTDCS 115
T+ + A +P KCGV++ + S STDC
Sbjct: 78 LTLSPRTIQNALELPSKCGVDLPYKFSPSTDCD 110
>AT2G15050.1 | chr2:6518888-6519259 FORWARD LENGTH=124
Length = 123
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 24 ASAAITCGQVGSAIAPCISYVTGRGGLTQ---GCCNGVKGLNNAARTTADRQAACRCLKT 80
A AA++CG+V S + PC Y+T GG+T CCNGV+ LN TT DR+ ACRC+K
Sbjct: 23 AKAALSCGEVNSNLKPCTGYLTN-GGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKN 81
Query: 81 LAGTI-KSLNLGAAAGIPGKCGVNVGF--PISLSTDCS 115
A + LN AAGIP +CG+ + + I +T C+
Sbjct: 82 AARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119
>AT2G18370.1 | chr2:7980687-7981475 FORWARD LENGTH=117
Length = 116
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 24 ASAAITCGQVGSAIAPCISYVT-GRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLA 82
+ +AI+C V + PC+SY+T G G + CC+GVK L A T+AD++AAC+C+K++A
Sbjct: 22 SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 81
Query: 83 GTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKV 117
++ ++ A + CG ++ S + DC+ V
Sbjct: 82 NSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,930,040
Number of extensions: 58201
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 11
Length of query: 118
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 33
Effective length of database: 8,776,209
Effective search space: 289614897
Effective search space used: 289614897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)