BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0113300 Os11g0113300|AK073235
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58375.1  | chr5:23596369-23596705 FORWARD LENGTH=86            88   1e-18
AT5G14602.1  | chr5:4709436-4709678 FORWARD LENGTH=81              72   7e-14
AT5G18150.1  | chr5:6000014-6000331 REVERSE LENGTH=77              67   2e-12

>AT5G58375.1 | chr5:23596369-23596705 FORWARD LENGTH=86
          Length = 85

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 1/83 (1%)

Query: 1  MCPLRVILIFLSATIAGFFLIRGLNADPDL-HDDADASESPRERPPVPLHSKVGSALKTG 59
          MCPLR+ILIFLSAT+AGFF+++ LN+  D   DD+       +   V   SKVG A+K+G
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 60 FWTMVDMASGKYLWRTLVSPPTK 82
          FWT VDMASG+YLW  L S   +
Sbjct: 61 FWTCVDMASGRYLWNNLCSNAKR 83



>AT5G14602.1 | chr5:4709436-4709678 FORWARD LENGTH=81
          Length = 80

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 1  MCPLRVILIFLSATIAGFFLIRGLNADPDLHDDADASESPRERPPVPLHSKVGSALKTGF 60
          MCPLR +L+F SA +AG+   R +N+ P+L  D       +E+  +    K    +  G 
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEKQGLDFKRK----MDNGL 56

Query: 61 WTMVDMASGKYLWRTL 76
          WT VDMASG+YLWR L
Sbjct: 57 WTFVDMASGRYLWRNL 72



>AT5G18150.1 | chr5:6000014-6000331 REVERSE LENGTH=77
          Length = 76

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 8/84 (9%)

Query: 1  MCPLRVILIFLSATIAGFFLIRGLNADPDLHDDADASESPRERPPVPLHSKVGSALKTGF 60
          MCP+R +L+F SA +AG+F  + +++ P+     D+ +   E+  + L  K    ++ GF
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEF----DSPDELNEKQELNLKKK----MENGF 52

Query: 61 WTMVDMASGKYLWRTLVSPPTKCE 84
          W  VDMASG+YLWR L     K +
Sbjct: 53 WVFVDMASGRYLWRNLKEMREKSQ 76



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,098,171
Number of extensions: 78183
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 3
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)