BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0112900 Os11g0112900|J023109K22
         (70 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05310.3  | chr5:1571271-1574458 FORWARD LENGTH=512             73   3e-14

>AT5G05310.3 | chr5:1571271-1574458 FORWARD LENGTH=512
          Length = 511

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 41/45 (91%)

Query: 7   GRILTVAGVTVAICASPFIATLNMVALALWPTWVAVAVTETIRKV 51
           GRILTVAGVTVAI ASPF+A  N+VA+A+WPTWV VAV+ET+RKV
Sbjct: 359 GRILTVAGVTVAISASPFVALGNLVAIAIWPTWVTVAVSETLRKV 403



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.332    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,183,497
Number of extensions: 28614
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 70
Length of database: 11,106,569
Length adjustment: 42
Effective length of query: 28
Effective length of database: 9,955,097
Effective search space: 278742716
Effective search space used: 278742716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 104 (44.7 bits)