BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0112800 Os11g0112800|AK120247
         (147 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51730.1  | chr3:19186970-19188436 FORWARD LENGTH=214           55   2e-08
AT5G01800.1  | chr5:307422-308646 FORWARD LENGTH=218               46   9e-06

>AT3G51730.1 | chr3:19186970-19188436 FORWARD LENGTH=214
          Length = 213

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 61  SKHSSLCSACENITSEAVNFLSEKQIQDKIRTILHDTCSQTFSFEQKCLETMDSYATLVF 120
           S    +C+ CE   ++A+++L +   Q +I   LHD CSQ   + Q+C+  +D Y  L F
Sbjct: 34  SNKEDVCTLCEEYVTDALSYLEKNVTQAEIIEDLHDRCSQLRGYSQQCISLVDYYVPLFF 93

Query: 121 AKIAEIKPAAFCKH 134
            ++   +P  FCK 
Sbjct: 94  LQLESFQPHYFCKR 107



>AT5G01800.1 | chr5:307422-308646 FORWARD LENGTH=218
          Length = 217

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 50  ASTKIPVTLLRSKH--SSLCSACENITSEAVNFLSEKQIQDKIRTILHDTCSQTFSFEQK 107
           A+  I +    S H  + +C  C+   +  +++L +   Q+++   LH +CSQ    +++
Sbjct: 20  ATNPILLEPFESAHDDNQVCELCDKYVTLVIDYLQDYDNQNELVEALHISCSQIPPLKKQ 79

Query: 108 CLETMDSYATLVFAKIAEIKPAAFCK 133
           CL  +D Y  L F +++ IK    CK
Sbjct: 80  CLSMVDHYTQLFFTQVSTIKSDQICK 105



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,913,264
Number of extensions: 98702
Number of successful extensions: 401
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)