BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0111800 Os11g0111800|Os11g0111800
         (96 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40435.1  | chr2:16887048-16888407 FORWARD LENGTH=159           62   7e-11
AT3G56220.1  | chr3:20858941-20860302 FORWARD LENGTH=157           61   1e-10

>AT2G40435.1 | chr2:16887048-16888407 FORWARD LENGTH=159
          Length = 158

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 15  GFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCADDTAFRLEALGSSQSEAAETSV 74
           GF INV   K+QP +L SVLEAFE++GL+VL+A  SC D  +F L A+G  ++E  E ++
Sbjct: 79  GFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTD--SFSLHAMG-LENEDGE-NM 134

Query: 75  DEQMVRHAVLQAIK 88
           D + V+ AV  AI+
Sbjct: 135 DAEAVKQAVTDAIR 148



>AT3G56220.1 | chr3:20858941-20860302 FORWARD LENGTH=157
          Length = 156

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 10  LEKKIGFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCADDTAFRLEALGSSQSEA 69
           LEK  GF I V   K++  +L  VLE FE+LGLDV++A VSC D   F L A+GSS ++ 
Sbjct: 76  LEK--GFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTD--TFSLHAIGSSNNDD 131

Query: 70  AETSVDEQMVRHAVLQAIKKCID 92
            +  +D + V+ AV +AI+   D
Sbjct: 132 GDC-IDAEAVKQAVAEAIRTWSD 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.126    0.323 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,697,509
Number of extensions: 54203
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 96
Length of database: 11,106,569
Length adjustment: 66
Effective length of query: 30
Effective length of database: 9,297,113
Effective search space: 278913390
Effective search space used: 278913390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)