BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0106700 Os11g0106700|AK059354
(183 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40300.1 | chr2:16831501-16833214 REVERSE LENGTH=260 203 3e-53
AT3G56090.1 | chr3:20814350-20815984 REVERSE LENGTH=260 187 2e-48
AT3G11050.1 | chr3:3463651-3465294 FORWARD LENGTH=254 186 8e-48
AT5G01600.1 | chr5:228149-229594 REVERSE LENGTH=256 183 6e-47
>AT2G40300.1 | chr2:16831501-16833214 REVERSE LENGTH=260
Length = 259
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 114/135 (84%), Gaps = 1/135 (0%)
Query: 50 EVLSGVVFQPFEELKGELSLVPQAKDQSLARQKFVDECEAAINEQINVEYNASYAYHSLF 109
+ LSGVVF+PF+E+K EL LVP + SLARQK+ DECEAAINEQINVEYN SY YH+++
Sbjct: 60 DALSGVVFEPFKEVKKELDLVPTSSHLSLARQKYSDECEAAINEQINVEYNVSYVYHAMY 119
Query: 110 AYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHPEKG 169
AYFDRDN+ALKG AKFFKESS EER+HAEKL++YQN RGGRV+LQSIV PL+EF+H +KG
Sbjct: 120 AYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNKRGGRVKLQSIVMPLSEFEHVDKG 179
Query: 170 DALYG-ELPLFCRSL 183
DALYG EL L L
Sbjct: 180 DALYGMELALSLEKL 194
>AT3G56090.1 | chr3:20814350-20815984 REVERSE LENGTH=260
Length = 259
Score = 187 bits (475), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 105/131 (80%), Gaps = 1/131 (0%)
Query: 54 GVVFQPFEELKGELSLVPQAKDQSLARQKFVDECEAAINEQINVEYNASYAYHSLFAYFD 113
GVVF+PFEE+K E+ LVP + SLAR + ECEAA+NEQINVEYN SY YH+L+AYFD
Sbjct: 62 GVVFEPFEEVKKEMDLVPSGQQLSLARHLYSPECEAAVNEQINVEYNVSYVYHALYAYFD 121
Query: 114 RDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHPEKGDALY 173
RDNVALKG AKFFKESS EER+HAE L++YQN RGGRV+LQ +V P +EFDHPEKGDALY
Sbjct: 122 RDNVALKGLAKFFKESSVEEREHAELLMEYQNKRGGRVKLQPMVLPQSEFDHPEKGDALY 181
Query: 174 G-ELPLFCRSL 183
EL L L
Sbjct: 182 AMELALSLEKL 192
>AT3G11050.1 | chr3:3463651-3465294 FORWARD LENGTH=254
Length = 253
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 40 AVCRAAGKGKEVLSGVVFQPFEELKGELSLVPQAKDQSLARQKFVDECEAAINEQINVEY 99
+V A G + L+GVVF+PFEE+K E+ LVP SLAR KF D+ E+AIN+QINVEY
Sbjct: 42 SVQAAKGTNTKSLTGVVFEPFEEVKKEMELVPTTPFVSLARHKFSDDSESAINDQINVEY 101
Query: 100 NASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTP 159
N SY YH+L+AYFDRDNV LKGFAKFF +SS EER HAE ++YQN RGGRV+LQSI+ P
Sbjct: 102 NVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKLQSILMP 161
Query: 160 LTEFDHPEKGDALYG-ELPLFCRSL 183
++EFDH EKGDAL+ EL L L
Sbjct: 162 VSEFDHEEKGDALHAMELALSLEKL 186
>AT5G01600.1 | chr5:228149-229594 REVERSE LENGTH=256
Length = 255
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/133 (65%), Positives = 103/133 (77%), Gaps = 1/133 (0%)
Query: 52 LSGVVFQPFEELKGELSLVPQAKDQSLARQKFVDECEAAINEQINVEYNASYAYHSLFAY 111
++GVVFQPFEE+K +P SLARQ+F D EA INEQINVEYN SY YHS++AY
Sbjct: 59 MTGVVFQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQINVEYNVSYVYHSMYAY 118
Query: 112 FDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHPEKGDA 171
FDRDNVA+KG AKFFKESS+EER HAEK ++YQN RGGRV+L IV+P++EF+H EKGDA
Sbjct: 119 FDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRVKLHPIVSPISEFEHAEKGDA 178
Query: 172 LYG-ELPLFCRSL 183
LY EL L L
Sbjct: 179 LYAMELALSLEKL 191
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,485,940
Number of extensions: 134859
Number of successful extensions: 314
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 4
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)