BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0105400 Os11g0105400|AK067673
(233 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25260.1 | chr1:8854163-8855766 REVERSE LENGTH=236 301 2e-82
AT3G11250.1 | chr3:3521453-3522826 FORWARD LENGTH=324 60 7e-10
AT3G09200.1 | chr3:2823364-2825020 REVERSE LENGTH=321 60 1e-09
AT2G40010.1 | chr2:16708578-16710448 REVERSE LENGTH=318 54 6e-08
>AT1G25260.1 | chr1:8854163-8855766 REVERSE LENGTH=236
Length = 235
Score = 301 bits (770), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 141/228 (61%), Positives = 183/228 (80%), Gaps = 1/228 (0%)
Query: 1 MPKSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQ 60
MPKSKR+RPVTLSKTKKK G E K +V I++AVE Y++ YVF+++NMRN K K+ R+Q
Sbjct: 1 MPKSKRDRPVTLSKTKKK-GREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQ 59
Query: 61 LKSSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFRE 120
+ + + FL KVMQ+ALGRS+ DE ++G++K+SK L+GDTGL T++P+++VE LF
Sbjct: 60 FRHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNA 119
Query: 121 FEEHDFARTGSIVTETVELKEGPLEQFTHEMEPFLRKQGLPVRLNKGAVELVADHIVCEE 180
+E+ DF+RTGSI ETVELKEGPLEQFTHEMEP LRK +PVRLNKG VELVAD +VCEE
Sbjct: 120 YEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEE 179
Query: 181 GKPISPEAAQTLRLLGMQMATFRLYLVCRWSSDDFEVYKEGLAQLRAE 228
GK +SP++A LRLL M+MATF+L L+CRWS DFE+Y+E L++L E
Sbjct: 180 GKQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYRE 227
>AT3G11250.1 | chr3:3521453-3522826 FORWARD LENGTH=324
Length = 323
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 91/201 (45%), Gaps = 11/201 (5%)
Query: 22 ERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSRIFLAGKKVMQIALGR 81
E+K T + ++ Y V DN+ + +L+++R+ L+ S + + +M+ ++
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 82 SSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFEEHDFARTGSIVTETVELKE 141
S + T + L LQG+ GL FT +V +++ AR G + V ++
Sbjct: 68 HSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 142 GPLEQFTHEMEP----FLRKQGLPVRLNKGAVELVADHIVCEEGKPISPEAAQTLRLLGM 197
G ++P F + +P ++NKG VE++ + ++G + A L LG+
Sbjct: 128 G-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGI 182
Query: 198 QMATFRLYLVCRWSSDDFEVY 218
+ F LV + D+ V+
Sbjct: 183 R--PFSYGLVVQSVYDNGSVF 201
>AT3G09200.1 | chr3:2823364-2825020 REVERSE LENGTH=321
Length = 320
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 91/201 (45%), Gaps = 11/201 (5%)
Query: 22 ERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSRIFLAGKKVMQIALGR 81
E+K T + ++ Y V DN+ + +L+++R+ L+ S + + +M+ ++
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 82 SSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFEEHDFARTGSIVTETVELKE 141
S + T + L LQG+ GL FT +V +++ AR G + V ++
Sbjct: 68 HSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 142 GPLEQFTHEMEP----FLRKQGLPVRLNKGAVELVADHIVCEEGKPISPEAAQTLRLLGM 197
G ++P F + +P ++NKG VE++ + ++G + A L LG+
Sbjct: 128 G-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGI 182
Query: 198 QMATFRLYLVCRWSSDDFEVY 218
+ F LV + D+ V+
Sbjct: 183 R--PFSYGLVVQSVYDNGSVF 201
>AT2G40010.1 | chr2:16708578-16710448 REVERSE LENGTH=318
Length = 317
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 26 KVVTDIK--DAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSRIFLAGKKVMQIALGRSS 83
K+V D K + Y+ V DN+ + +L+++R+ L+ S + L GK M R
Sbjct: 11 KIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDS-VVLMGKNTMMKRSVRIH 69
Query: 84 ADEAKTG---LHKLSKFLQGDTGLFFTNLPRDDVERLFREFEEHDFARTGSIVTETVELK 140
AD KTG L LQG+ GL FT +V +++ AR G + V ++
Sbjct: 70 AD--KTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQ 127
Query: 141 EGPLEQFTHEMEP----FLRKQGLPVRLNKGAVELVADHIVCEEGKPISPEAAQTLRLLG 196
G ++P F + +P ++NKG VE++ + ++G + A L LG
Sbjct: 128 PG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 182
Query: 197 MQMATFRLYLVCRWSSDDFEVYK 219
++ F LV D+ V+
Sbjct: 183 IR--PFSYGLVVESVYDNGSVFN 203
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,827,811
Number of extensions: 192271
Number of successful extensions: 581
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 4
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)