BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0103100 Os11g0103100|Os11g0103100
         (824 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60150.1  | chr5:24218211-24223245 FORWARD LENGTH=1196          99   1e-20

>AT5G60150.1 | chr5:24218211-24223245 FORWARD LENGTH=1196
          Length = 1195

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 756  NLVPFTEEWLAVMEAFGEEVLEQKTGAVQNSPTDKAAPEPSPWSPVKRKAQDVGPFDCTK 815
            N VPF++EWLA +EA GEE+L  K+G VQ+SPT+K+APEP PWSPVK+  Q VGPFDCTK
Sbjct: 1125 NAVPFSDEWLAAIEAAGEEILTLKSGRVQHSPTEKSAPEPGPWSPVKKSNQVVGPFDCTK 1184

Query: 816  YS 817
            Y+
Sbjct: 1185 YN 1186




 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 127/300 (42%), Gaps = 44/300 (14%)

Query: 41  KKRKNKPAGGFNLRKSIAWNPAFFTEQGVLDNTELSMLTGSQVKATRSPASGFSSTFSPL 100
           KK+KN    GFNLRKS+AW+ AF TE+GVLD++ELS +TG+         +     +   
Sbjct: 101 KKKKN---AGFNLRKSLAWDRAFSTEEGVLDSSELSKITGTACHLGGDRLAAIQEEYRES 157

Query: 101 SRFGKSSNTSVLKEVGENSRGKFPSKCLSAENKGRKLFASSKASEQDERKAP-------- 152
               K + +  L+ + EN     P   ++++N+ +KL +     E    K P        
Sbjct: 158 MSASKCNVSPGLQALEENLFNDLP---VNSKNREKKLVSGIMPKELSISKVPTTKSDPVT 214

Query: 153 AGTQDKRSAKAVQKSIPRPPAGYKYPYGDSGIIGYVLFFFLNRIMPLPAQIQRIPKKSEX 212
            G   KR+ ++  K+    P   K      G       F  N           +  KS  
Sbjct: 215 VGNNMKRTTQSPIKAKNSQPTQLKNSQRSLGSES----FSKNTSSTKSKTKSSLASKS-- 268

Query: 213 XXXXXXXXXXXXXXXNVPKPTTRPA--TVTSERTHKVEGLPLESKTERSSVIKSS-GPTI 269
                          ++PKP+ + A   V S+ +     +P  S ++ S V KS+ GP  
Sbjct: 269 ---------------SIPKPSLKQARRNVISKSSE----IPTVSYSQHSVVAKSNVGPMT 309

Query: 270 GKNMVPTVTA-ICQETNGSGKCETFSPYSQDNPSSSVVAPARISAKPSALRMPSPSVGFF 328
             ++     A +  ++N      + +  S +   S+  A +R+  KPS LR P PS+G+F
Sbjct: 310 ASDVAMLGHASVIPDSNVITLGTSLAQSSCNKAGSTQSAVSRL-GKPSGLRAPKPSIGYF 368



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.125    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,766,683
Number of extensions: 844217
Number of successful extensions: 2171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2171
Number of HSP's successfully gapped: 2
Length of query: 824
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 717
Effective length of database: 8,173,057
Effective search space: 5860081869
Effective search space used: 5860081869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 116 (49.3 bits)