BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0102800 Os11g0102800|AB110174
(270 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60170.2 | chr5:24228178-24232394 FORWARD LENGTH=988 103 1e-22
AT3G45630.1 | chr3:16748751-16753190 REVERSE LENGTH=990 97 7e-21
>AT5G60170.2 | chr5:24228178-24232394 FORWARD LENGTH=988
Length = 987
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 52/262 (19%)
Query: 27 TSKPKVSAPPGFSAPARVPPGFSSGFSSHEGLNPPPGFSSHNGPNPPPGFSSQGGSNQIY 86
S+P+VSAPPGFSAP R+PP PGFSSH G SS +
Sbjct: 760 VSRPQVSAPPGFSAPNRLPP---------------PGFSSHERV----GLSS----DTTL 796
Query: 87 GSAYSETRPFDYLLGINTSHYQPQLARQ--TSDIEFVDPAILAVGKGRMPGISDSGLEMK 144
G+ + ++ N P + SDI+FVDPAILAVG+G + ++ L+M+
Sbjct: 797 GNRFLDSTSLR-----NAYQVPPPVGNSNGASDIDFVDPAILAVGRGMV----NADLDMR 847
Query: 145 TSHTFPSQLQT-SNDPRFQLLMQQNVPSHQNV-GFAEHVQDAFNPMNDNY-LASRLIPQN 201
+ F SQL + N+ +L QQ++ S Q V GF +++ +ND Y +SRL+ Q
Sbjct: 848 SG--FSSQLNSFENETGLHMLRQQSLSSAQQVNGFHHDLRNLSPSLNDPYGFSSRLMDQT 905
Query: 202 HG-SLSSYTQMSLQQPRS-SHLTNG-HWDGWGDLRQGNNVSMPDMSR--------MLYPT 250
G SLS ++Q+ QQP + S L+NG HWD W + + NN+ M ++ R LY
Sbjct: 906 QGSSLSPFSQLPRQQPSANSILSNGHHWDKWNEGQSVNNIGMAELLRNERLGFNGSLYNN 965
Query: 251 --EANNFHMLGSNDLYNRAFGL 270
E F + D+YNR +G+
Sbjct: 966 GYEEPKFRIPSPGDVYNRTYGI 987
>AT3G45630.1 | chr3:16748751-16753190 REVERSE LENGTH=990
Length = 989
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 130/263 (49%), Gaps = 49/263 (18%)
Query: 27 TSKPKVSAPPGFSAPARVPPGFSSGFSSHEGLNPPPGFSSHNGPNPPPGFSSQGGSNQIY 86
++ +VSAPPGFSAP R+PP PGFSSH Q G +
Sbjct: 757 VARTQVSAPPGFSAPNRLPP---------------PGFSSH-----------QRG--DLS 788
Query: 87 GSAYSETRPFDYLLGINTSHYQPQLA---RQTSDIEFVDPAILAVGKGRM-PGISDSGLE 142
S TR D + +++ P + DIEF+DPAILAVG+GR+ G+ + +
Sbjct: 789 SDIASGTRLLDSANLLRNAYHVPPPSGNLNAAGDIEFIDPAILAVGRGRLHNGMETADFD 848
Query: 143 MKTSHTFPSQLQT-SNDPRFQLLMQQNVPSHQNVGFAE--HVQDAFNPMNDNY-LASRLI 198
+++ F SQL + ND R QLL Q+++ + Q GF + +V + + +D Y ++SR
Sbjct: 849 LRSG--FSSQLNSFDNDARLQLLAQRSLAAQQVNGFHDPRNVNNFSSSFSDPYGISSRPT 906
Query: 199 PQNHGS-LSSYTQMSLQQPRSSHLTNGHWDG-WGDLRQGNNVSMPDMSR---------ML 247
Q G+ LS +TQ+ Q + L+NGHWD W + + GNN+ + + R +
Sbjct: 907 DQTQGTGLSPFTQLPRQASANPLLSNGHWDNKWNEPQSGNNLGITQLLRNERMGFNDNVY 966
Query: 248 YPTEANNFHMLGSNDLYNRAFGL 270
E F G D YNR +G+
Sbjct: 967 SGFEEPKFRRPGPGDPYNRTYGI 989
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,840,090
Number of extensions: 336614
Number of successful extensions: 1345
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1345
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)