BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0102700 Os11g0102700|AK120376
         (240 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60190.1  | chr5:24235319-24235999 FORWARD LENGTH=227          127   5e-30

>AT5G60190.1 | chr5:24235319-24235999 FORWARD LENGTH=227
          Length = 226

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/206 (38%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 5   GGEEEEERVLSHGDVVLFRCDLTILRGPHFLNDRIIAFYXXXXXXXXXXXXXXXXXPPSI 64
           G   +++++LS+ DVVL R DL IL GP FLNDR+I FY                 PPSI
Sbjct: 2   GNTSDDDKILSYEDVVLRRSDLDILNGPIFLNDRVIEFYLSFLSTVHSSTTISLI-PPSI 60

Query: 65  PYLLSNLXXXXXXXXXXXXLRLASRRLVLLPVNDNPDVSHAEGGSHWTLLVLDNSNAVSG 124
            + +SN             L L  + L++LPVNDN +V  AEGG HW+LLV         
Sbjct: 61  AFWISNCPDTEYLKDFMKPLNLRDKDLLILPVNDNSNVEVAEGGLHWSLLVYYK----EA 116

Query: 125 PRFVHHDSLPPTNXXXXXXXXXXXXXXXXXXXIPLIE-GPTPRQTNGYDCGVFVLAVARA 183
             FVHHDS    N                       E   TP+Q NGYDCGVF+LA AR 
Sbjct: 117 NTFVHHDSYMGVNRWSAKQLFKAVSPFVSNGDASYKECTDTPQQKNGYDCGVFLLATARV 176

Query: 184 ICNWWPTRARHSNSDSDWLEAVKREV 209
           IC W+ +     N D  W   VK  V
Sbjct: 177 ICEWFSSGGM-KNRDELWFANVKETV 201



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,236,071
Number of extensions: 135743
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)