BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0102500 Os11g0102500|AK068187
         (191 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45770.1  | chr3:16805753-16807774 REVERSE LENGTH=376          196   6e-51

>AT3G45770.1 | chr3:16805753-16807774 REVERSE LENGTH=376
          Length = 375

 Score =  196 bits (498), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 112/142 (78%), Gaps = 3/142 (2%)

Query: 37  VLYDQHGPPDKVLRVAELPAAEIGERDVCVRMLAAPINPSDLNRVEGVYPVRPPLPAAVA 96
           ++Y++HG PD V R+  LP  E+ E DVCV+M+AAPINPSD+NR+EGVYPVRPP+PA V 
Sbjct: 48  IVYEEHGSPDSVTRLVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPVRPPVPA-VG 106

Query: 97  GYEGVGQVHALGGAVDSRLLSPGDWVIPSPPSLGTWQTYIVNPATAWHRVRSDVPPQYVA 156
           GYEGVG+V+A+G  V+    SPGDWVIPSPPS GTWQTY+V   + WH++  + P +Y A
Sbjct: 107 GYEGVGEVYAVGSNVNG--FSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDKECPMEYAA 164

Query: 157 TVTVNPLTALRMLCDFVNLAPG 178
           T+TVNPLTALRML DFVNL  G
Sbjct: 165 TITVNPLTALRMLEDFVNLNSG 186



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,569,329
Number of extensions: 147440
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)