BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0579300 Os10g0579300|AK103692
         (160 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03100.1  | chr3:705564-707578 REVERSE LENGTH=160              242   7e-65

>AT3G03100.1 | chr3:705564-707578 REVERSE LENGTH=160
          Length = 159

 Score =  242 bits (617), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 125/156 (80%)

Query: 3   AVVRGVLNGIREKGLSNFLRHARDEGYFKCLLDGNLLQTKIHNIGATLVGVDKFGNKYYE 62
            V +  L  IREKGL  F+R  R+EG+ +CL DGNLLQTKIHNIGATLVGVDKFGNKYY+
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KLHDTQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDSTGDELLEQNAKAYIVDHKEN 122
           KL DTQYGRHRWVEYA K RYNASQVP EWHGWLH ITD TGDELL    K Y ++HKEN
Sbjct: 64  KLGDTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKEN 123

Query: 123 FSGEGEELIYHSKGHALNPGQRDWTRYQPWEPKKEE 158
           FSGEG+  IYHSKGH LNPGQ++WTRYQ W P K +
Sbjct: 124 FSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,102,840
Number of extensions: 181225
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)