BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0577700 Os10g0577700|AK100237
         (375 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35500.1  | chr2:14914038-14915909 FORWARD LENGTH=388          356   1e-98

>AT2G35500.1 | chr2:14914038-14915909 FORWARD LENGTH=388
          Length = 387

 Score =  356 bits (914), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/315 (58%), Positives = 233/315 (73%), Gaps = 3/315 (0%)

Query: 58  ASVSSSTAPAKDYEFTDGGGEVELRLDIGKLGIENSRDVFVDVDDTSLLVRAKSDGTLRT 117
           ++VS+ST    DYEFTDGG EVELRL +    I + +D+ VD D TSL V+ K +G L T
Sbjct: 71  SAVSTSTI---DYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRNGLLIT 127

Query: 118 LINVKQLFDRIKSSETIWFIDEDQLVVNLKKVEQELKWPDIDESWESLTSGITQLLTGIS 177
           L+    LF++I  SETIW+IDEDQLVVN+KKV+ ELKWPDI ESWESLT+G+ QLL G S
Sbjct: 128 LLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQLLKGAS 187

Query: 178 VHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATEKSIDKWLASEGVDSVAEAECVV 237
           ++IVGDST+IN+ V++E+A G+GY P+ + ELLES ++++ID W+ +EG DSVAEAE  V
Sbjct: 188 IYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAEAESSV 247

Query: 238 LESLSSHVRTVVATLGGKQGAASRFDKWQYLHAGFTVWLXXXXXXXXXXXXXXXXXXXXX 297
           LESLSSHVRTVV+TLGGK GAA R D+W++L++GFTVW+                     
Sbjct: 248 LESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEESAKEEARRSKQE 307

Query: 298 GNVAYAKADVVVKLGGWDPEYTRAVAQGCLVALKQLTLADKKLAGKKSLYMRLGCRGDWP 357
             + Y+ ADVVVKL GWDP + ++VAQ  L ALKQL ++DK L GKKSLY+RLGCRGDWP
Sbjct: 308 REIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSLYIRLGCRGDWP 367

Query: 358 NIEPPGWDPDSDAPP 372
           NI+PPGWDP SD  P
Sbjct: 368 NIKPPGWDPSSDTGP 382



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,646,250
Number of extensions: 307003
Number of successful extensions: 1205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 275
Effective length of database: 8,364,969
Effective search space: 2300366475
Effective search space used: 2300366475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)