BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0576100 Os10g0576100|AK059148
(355 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16760.1 | chr5:5509890-5510849 FORWARD LENGTH=320 325 2e-89
AT4G08170.2 | chr4:5163707-5167000 REVERSE LENGTH=354 225 3e-59
AT4G33770.1 | chr4:16193589-16196242 REVERSE LENGTH=392 211 4e-55
AT2G43980.1 | chr2:18208437-18211604 REVERSE LENGTH=489 81 7e-16
>AT5G16760.1 | chr5:5509890-5510849 FORWARD LENGTH=320
Length = 319
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/317 (52%), Positives = 209/317 (65%), Gaps = 5/317 (1%)
Query: 23 DGQRRRYLIGYALAPKKQQSFIQPSLVSRAAGRGMDLVPVDPSRPLPEQGPFHLLIHKLY 82
D + RYL+GYALA KKQ SFIQPSL+ + RG+DLV +DP++ L EQG +IHKLY
Sbjct: 3 DSIQERYLVGYALAAKKQHSFIQPSLIEHSRQRGIDLVKLDPTKSLLEQGKLDCIIHKLY 62
Query: 83 GEEWRGQLDAFSXXXXXXXXXXXXXXIDRLHNRISMLQVVSELDVPLHAHHHHTFGIPSQ 142
W+ L F I+RLHNR+SML+V+++L P+ FG+P Q
Sbjct: 63 DVYWKENLHEFREKCPGVPVIDLPEAIERLHNRVSMLEVITQLRFPVSDSER--FGVPEQ 120
Query: 143 VVVYXXXXXXXXXXXXXXRFPLIAKPLVADGTAKSHKMSLVYHREGLRKLRPPLVLQEFV 202
VVV +FP+IAKPL ADG+AKSHKM L+Y +EG++ L+ P+VLQEFV
Sbjct: 121 VVVMDSSVLSGGGALGELKFPVIAKPLDADGSAKSHKMFLIYDQEGMKILKAPIVLQEFV 180
Query: 203 NHGGVIFKVYVVGAHVTCVKRRSLPDVSSDVLQDASAEGSLSFSQVSNL-PNERTAQEYY 261
NHGGVIFKVYVVG HV CVKRRSLPD+S + + +++GSL FSQ+SNL E EY
Sbjct: 181 NHGGVIFKVYVVGDHVKCVKRRSLPDISEEKI--GTSKGSLPFSQISNLTAQEDKNIEYG 238
Query: 262 DDMRLEDAIMPPTAFINDIXXXXXXXXXXXXFNFDMIRDARAGDRYLVIDINYFPGYAKM 321
+D LE MPP +F+ D+ FNFD+IRDA+ +RYL+IDINYFPGYAKM
Sbjct: 239 EDRSLEKVEMPPLSFLTDLAKAMRESMGLNLFNFDVIRDAKDANRYLIIDINYFPGYAKM 298
Query: 322 PGYETVLTDFFWEMVHK 338
P YE VLT+FFW+MV K
Sbjct: 299 PSYEPVLTEFFWDMVTK 315
>AT4G08170.2 | chr4:5163707-5167000 REVERSE LENGTH=354
Length = 353
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 174/313 (55%), Gaps = 10/313 (3%)
Query: 26 RRRYLIGYALAPKKQQSFIQPSLVSRAAGRGMDLVPVDPSRPLPEQGPFHLLIHKLYGEE 85
++ ++GYAL KK +SF+QP L A +G+ V +D ++PL EQGPF +++HK G+E
Sbjct: 38 KKSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKE 97
Query: 86 WRGQLDAFSXXXXXXXXXXXXXXIDRLHNRISMLQVVSELDVPLHAHHHHTFGIPSQVVV 145
WR L+ F I L NR SMLQ V+++++ + + G+P Q+V+
Sbjct: 98 WRRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNL---SDSNGRVGVPKQLVI 154
Query: 146 YXXXXXX-XXXXXXXXRFPLIAKPLVADGTAKSHKMSLVYHREGLRKLRPPLVLQEFVNH 204
R PL+AKPLVADG+AKSH++SL Y + L KL PPLVLQEFVNH
Sbjct: 155 KKDASSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNH 214
Query: 205 GGVIFKVYVVGAHVTCVKRRSLPDVSSDVLQDASAEGSLSFSQVSNLPNERTAQEYYDDM 264
GGV+FKVY+VG + V+R SLPDVS L ++ G F +VS + +
Sbjct: 215 GGVLFKVYIVGEAIRVVRRFSLPDVSRRELPKSA--GVFRFPRVSCAAASADDADLDPSI 272
Query: 265 RLEDAIMPPTAFINDIXXXXXXXXXXXXFNFDMIRDARAGDRYLVIDINYFPGYAKMPGY 324
A +PP + + FN D+IR+ DR+ VIDINYFPGY KMP Y
Sbjct: 273 ----AELPPRPLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPGYGKMPEY 328
Query: 325 ETVLTDFFWEMVH 337
E V TDF +V
Sbjct: 329 EHVFTDFLLSVVQ 341
>AT4G33770.1 | chr4:16193589-16196242 REVERSE LENGTH=392
Length = 391
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 174/311 (55%), Gaps = 10/311 (3%)
Query: 28 RYLIGYALAPKKQQSFIQPSLVSRAAGRGMDLVPVDPSRPLPEQGPFHLLIHKLYGEEWR 87
+ ++GYAL KK++SF+QP L A +G+ V +D +RPL EQGPF +++HKL G+EW
Sbjct: 80 KLVVGYALTSKKKKSFLQPKLELLARRKGIFFVAIDLNRPLSEQGPFDVVLHKLLGKEWE 139
Query: 88 GQLDAFSXXXXXXXXXXXXXXIDRLHNRISMLQVVSELDVPLHAHHHHTFGIPSQVVVYX 147
++ + I R++NR SMLQ +++L + + + +P Q+VV
Sbjct: 140 EVIEDYQQKHPEVTVLDPPGSIQRIYNRQSMLQGMADLKL---SDCSGSLFVPKQMVVLK 196
Query: 148 XXXXXX-XXXXXXXRFPLIAKPLVADGTAKSHKMSLVYHREGLRKLRPPLVLQEFVNHGG 206
+FPL+AKPL DGTAKSH++ L Y R L +L PPLVLQEFVNHGG
Sbjct: 197 DSAASADAVVEAGLKFPLVAKPLWIDGTAKSHQLYLAYDRRSLAELDPPLVLQEFVNHGG 256
Query: 207 VIFKVYVVGAHVTCVKRRSLPDVSSDVLQDASAEGSLSFSQVSNLPNERTAQEYYDDMRL 266
V+FKV+VVG + ++R SLP+VS+ + A +G F +VS+ + +
Sbjct: 257 VMFKVFVVGDVIKVMRRFSLPNVSN--CEKAKVDGVFQFPRVSSAAASADNADLDPRV-- 312
Query: 267 EDAIMPPTAFINDIXXXXXXXXXXXXFNFDMIRDARAGDRYLVIDINYFPGYAKMPGYET 326
A +PP F+ + FN DMIR+ + + + VIDINYFPGY K+P YE
Sbjct: 313 --AELPPKPFLEALVKELRSLLGLRLFNIDMIREHGSKNVFYVIDINYFPGYGKLPDYEQ 370
Query: 327 VLTDFFWEMVH 337
V DFF +
Sbjct: 371 VFVDFFQNLAQ 381
>AT2G43980.1 | chr2:18208437-18211604 REVERSE LENGTH=489
Length = 488
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 18/180 (10%)
Query: 162 FPLIAKPLVADGTAKSHKMSLVYHREGLRKLRPPL--VLQEFVNHGGVIFKVYVVGAHVT 219
P I KP VA G A +H M++V+ E + L P+ ++QE+V+H IFK YV+G +
Sbjct: 310 LPCIVKPQVACGVADAHSMAIVFRVEDFKNLNTPVPAIIQEYVDHSSRIFKFYVLGETIF 369
Query: 220 CVKRRSLPDVSSDVLQDASAEGSLS---FSQVSNLPNERTAQEYYDDMRLEDAIMPPTAF 276
++S+P SS L+ ++ E L F + +LP + Q ++ LE
Sbjct: 370 HAVKKSIP--SSSSLRKSAEENGLKPILFDSLKSLPVDSANQNPVSEIDLE--------L 419
Query: 277 INDIXXXXXXXXXXXXFNFDMIRDARAGDRYLVIDINYFPGYAKMPGYETVLTDFFWEMV 336
+ + F FD++ GD ++++D+NY P + ++P + + FWE +
Sbjct: 420 VTEAATWLRKKLDLTIFGFDVVIQEGTGD-HVIVDLNYLPSFKEVP--DNIAVPAFWEAI 476
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,928,594
Number of extensions: 255917
Number of successful extensions: 499
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 4
Length of query: 355
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,364,969
Effective search space: 2133067095
Effective search space used: 2133067095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)