BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0576000 Os10g0576000|AK058777
         (60 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49140.1  | chr1:18177696-18178269 REVERSE LENGTH=108           92   4e-20
AT3G18410.1  | chr3:6323203-6323761 FORWARD LENGTH=107             91   8e-20

>AT1G49140.1 | chr1:18177696-18178269 REVERSE LENGTH=108
          Length = 107

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 48/55 (87%)

Query: 2   AKIIRDRLRWCYRIEGVNHHQKCRHLVDQYLEATRGVGWGKDARPPELHDPKKVV 56
           AKI+R++++WCYR+EGVNH+QKCRHLV QYL+ATRGVGWGKD RP  LH PK V 
Sbjct: 48  AKILREKVKWCYRVEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVA 102



>AT3G18410.1 | chr3:6323203-6323761 FORWARD LENGTH=107
          Length = 106

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 52/59 (88%), Gaps = 1/59 (1%)

Query: 2   AKIIRDRLRWCYRIEGVNHHQKCRHLVDQYLEATRGVGWGKDARPPELHDPK-KVVEAD 59
           AKI+R++++WCYR+EGVNH+QKCRHLV QYL++TRGVGWGKD RP  LH PK + VEA+
Sbjct: 48  AKILREKVKWCYRVEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,461,265
Number of extensions: 44629
Number of successful extensions: 76
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 11,106,569
Length adjustment: 33
Effective length of query: 27
Effective length of database: 10,201,841
Effective search space: 275449707
Effective search space used: 275449707
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)