BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0575200 Os10g0575200|AK100015
(1507 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26890.1 | chr2:11462327-11473841 REVERSE LENGTH=2555 2055 0.0
>AT2G26890.1 | chr2:11462327-11473841 REVERSE LENGTH=2555
Length = 2554
Score = 2055 bits (5323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1029/1486 (69%), Positives = 1176/1486 (79%), Gaps = 16/1486 (1%)
Query: 1 MAIVYEQHNKVIGPFDGTAHITVXXXXXXXXXXXXXXXXXXXXXXXXXSNXXXXXXXXXX 60
MAIVYEQH IGPF+GTAHIT N
Sbjct: 1072 MAIVYEQHYNTIGPFEGTAHITALIDRTNDRALRHRLLLLLKALVKVLLNVEGCVVVGGC 1131
Query: 61 XXXXDMLTVAHEASERTAIPLQSNLIAATAFMEPLKEWMYIDKDGKQVGPLEKDAIRRLW 120
D+LTV HE SERT IPLQSNLIAATAFMEP KEWMYIDK G +VGP+EKD IR LW
Sbjct: 1132 VLAVDLLTVVHENSERTPIPLQSNLIAATAFMEPPKEWMYIDKGGAEVGPVEKDVIRSLW 1191
Query: 121 SKKSIDWTTKCWASGMSDWKRLRDIRELRWALAVKVPVLTPSQIGDAALSILHSMASAHS 180
SKK IDWTTKC A GMSDWK+LRDIRELRWA+AV+VPVLTPSQ+GDAALSILHSM SAHS
Sbjct: 1192 SKKDIDWTTKCRALGMSDWKKLRDIRELRWAVAVRVPVLTPSQVGDAALSILHSMVSAHS 1251
Query: 181 DLDDAGEIVTPTPRVKRILSSPRCLPHVAQAMLTGEPSIVEAAASLLKAIVTRNPKAMIR 240
DLDDAGEIVTPTPRVKRILSS RCLPH+AQA+L+GEP IVEA A+LLK +VTRN KAMIR
Sbjct: 1252 DLDDAGEIVTPTPRVKRILSSTRCLPHIAQALLSGEPVIVEAGAALLKDVVTRNSKAMIR 1311
Query: 241 LYSTGAFYFALAYPGSNLLSIAQLFSATHTHQAFHGGEEAAVSSSLPLAKRSVLGGLLPE 300
LYSTGAFYFALAYPGSNL SIAQLFS TH HQAFHGGEEA VSSSLPLAKRSVLGGLLPE
Sbjct: 1312 LYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAFHGGEEATVSSSLPLAKRSVLGGLLPE 1371
Query: 301 SLLYVLERSGPSAFAAAMVSDSDTPEIIWTHKMRAEHLIRQVLQHLGDFPQKLAQHCHSL 360
SLLYVLERSGP+AFAA MVSDSDTPEIIWTHKMRAE+LI QVLQHLGD+PQKL+QHCHSL
Sbjct: 1372 SLLYVLERSGPAAFAAGMVSDSDTPEIIWTHKMRAENLICQVLQHLGDYPQKLSQHCHSL 1431
Query: 361 YDYAPMPPVTYPNLKDEMWCHRYYLRNLCDEIRFPNWPIVEHVEFLQSLLAMWREELTRR 420
YDYAPMPPVTYP L+DEMWCHRYYLRNLCDEI+FPNWPIVEHVEFLQSLL MWREELTR+
Sbjct: 1432 YDYAPMPPVTYPELRDEMWCHRYYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREELTRK 1491
Query: 421 PMDLSEEDACKILEISL-----DDLVLGXXXXXXXXXXXXXXXXTNNIENIDEEKLKRQY 475
PMDLSE +ACKILEISL DDL + I+N+DEEKLKRQY
Sbjct: 1492 PMDLSEGEACKILEISLNNVSSDDL----NRTASVELNEEISNISKQIQNLDEEKLKRQY 1547
Query: 476 RKLAIKYHPDKNPEGREKFVAVQKAYERLQASMQGLQGPQVWXXXXXXXAQCILYKRYGH 535
RKLA++YHPDKNPEGREKF+AVQKAYE LQA+MQGLQGPQ W AQCILY+RYGH
Sbjct: 1548 RKLAMRYHPDKNPEGREKFLAVQKAYECLQATMQGLQGPQPWRLLLLLKAQCILYRRYGH 1607
Query: 536 VLEPFKYAGYPMLLNAVTVDKDDSNFLSSERAPLLIAASELIWLTCASSSLNGEELIRDG 595
VL PFKYAGYPMLL+AVTVDKDD+NFLS++R+PLL+AASEL+ LTCA+SSLNGEEL+RDG
Sbjct: 1608 VLRPFKYAGYPMLLDAVTVDKDDNNFLSNDRSPLLVAASELVSLTCAASSLNGEELVRDG 1667
Query: 596 GIPLLATLLSRCMCIVQPTTPANEPAARIVTNIMHTFAVLSQFESGRAEILKFGGLVEDI 655
G+ LL+TLLSRCMC+VQPTT +EPAA IVTN+M T +V+SQFES RA L+ L+EDI
Sbjct: 1668 GVQLLSTLLSRCMCVVQPTTSQHEPAAIIVTNVMRTLSVISQFESARAGFLELPSLIEDI 1727
Query: 656 VHSTELEFVPSAVDAALQTAANISVSSELQSSLLAAGFLWYVLPLLLQYDSTAEENATSE 715
VH TELE VP+AVDAALQ+ A +SV ELQ LL AG LWY+LPLLLQYDSTAEE+ + E
Sbjct: 1728 VHCTELERVPAAVDAALQSIAKVSVFPELQHGLLKAGALWYILPLLLQYDSTAEESNSVE 1787
Query: 716 AHGVGARVQIAKNLHAVHATQALSRLCGLGGD-GISPSNQSAFDALRALLTPKLADMLRN 774
+HGVG +QIAKN HA+ A+QALSRL GL D ++P N +A D L+ALLTPKLA +L++
Sbjct: 1788 SHGVGVSIQIAKNEHALQASQALSRLTGLCADESLTPYNATAADVLKALLTPKLASLLKD 1847
Query: 775 HPPKXXXXXXXXXXXXPEIIWNSSTRGELLKFVDQQRASQGPDGSYDLTESHCFTYQALS 834
K PEIIWNS+TR ELL FVD+QRA Q PDGSYDL + F+Y ALS
Sbjct: 1848 EVAKDLLSKLNTNLETPEIIWNSATRSELLNFVDEQRACQCPDGSYDLKNAQSFSYDALS 1907
Query: 835 KELNVGNVYLRVYNNQPDYEISDQEGFCIALLKFIAELVQ-KWNSLSLDENMMHQCGTAI 893
KE+ VGNVYL+VYN+QPD EIS+ E FC AL+ FI+ LV + S+S D+N++ ++
Sbjct: 1908 KEVFVGNVYLKVYNDQPDSEISEPESFCNALIDFISSLVHTELPSVSEDQNLIEDRNSSN 1967
Query: 894 ETSVTENGDISGSTNEGKEEDSLEKHNRGVTDGDSEVIMNLRSGLTSLQNLLTSNPGLAA 953
+T ++ S E E + + G+ + + +I +L+ GLT+LQNLLT P LA+
Sbjct: 1968 DTPELQSSVAEPSLIE--EHSDHQPSSEGMKNEECFLIDHLQLGLTALQNLLTKYPDLAS 2025
Query: 954 VFASKERLTPLFECLALPVPPESNIPQICLSVLSLLTKHAPCLEAMVAERTSLILLFQIL 1013
VF+SKERL PLFEC ++ + +++IP++CL+VLS LT +APCLE MV++ +SL+LL Q+L
Sbjct: 2026 VFSSKERLLPLFECFSVAIASKTDIPKLCLNVLSRLTAYAPCLETMVSDGSSLLLLLQML 2085
Query: 1014 HCNRSCRDGALTVLYSLASTPELAWAAAKHGGVVYXXXXXXXXXXXXXXQQRAAAASLLG 1073
H S R+GAL VLY+LASTPELAWAAAKHGGVVY QQRAAAASLLG
Sbjct: 2086 HSAPSFREGALHVLYALASTPELAWAAAKHGGVVYILELLLPLQKEIPLQQRAAAASLLG 2145
Query: 1074 KLVGQPMHGPRVAITLARFLPDGLVSAIRDGPGEAVVSCLEQTTETPELVWTPAMAASLS 1133
KLV QPMHGPRVAITL RFLPDGLVS IRDGPGEAVV LE+TTETPELVWTPAMAASLS
Sbjct: 2146 KLVAQPMHGPRVAITLVRFLPDGLVSIIRDGPGEAVVHALERTTETPELVWTPAMAASLS 2205
Query: 1134 AQLSTMATDLYQEQMKGRVVDWDVPEQASGQHVMKDEPQVGGIYVRLFLKDPKFPLRNPK 1193
AQ++TMA+D+Y+EQ KG V++WDVPEQ++GQ M+DEPQVGGIYVR FLKDPKFPLRNPK
Sbjct: 2206 AQIATMASDIYREQQKGSVIEWDVPEQSAGQQEMRDEPQVGGIYVRRFLKDPKFPLRNPK 2265
Query: 1194 RFLEGLLDQYVSSVAATHYEANAVDPEXXXXXXXXXXXXXRVHPALADHVGYLGYVPKLV 1253
RFLEGLLDQY+S++AATHYE + VDPE RVHPALADH+G+LGYVPKLV
Sbjct: 2266 RFLEGLLDQYLSAMAATHYEQHPVDPELPLLLSAALVSLLRVHPALADHIGHLGYVPKLV 2325
Query: 1254 SAMAYEGRRDTMASGQTTSRLQAEPSNQENSADSTV--QTPQERVRLSCLRVLHQLASST 1311
+A+AYEGRR+TM+SG+ + E++ S++ QTPQERVRLSCLRVLHQLA+ST
Sbjct: 2326 AAVAYEGRRETMSSGEVKAEEIGSDGVNESTDPSSLPGQTPQERVRLSCLRVLHQLAAST 2385
Query: 1312 TCAEAMAATSAGTPQVVPLLMKAIGWQGGSILALETLKRVVGAGNRARDALVAQXXXXXX 1371
TCAEAMAATSAG QVVPLLMKAIGW GGSILALETLKRVV AGNRARDALVAQ
Sbjct: 2386 TCAEAMAATSAGNAQVVPLLMKAIGWLGGSILALETLKRVVVAGNRARDALVAQGLKVGL 2445
Query: 1372 XXXXXXXXDWRAGGRQGLCNQMKWNESEASIGRVLAVEVLHAFATEGAHCAKVREILNSS 1431
DWR GGR GL + MKWNESEASIGRVLAVEVLH FATEGAHC+KVREIL++S
Sbjct: 2446 IEVLLGLLDWRTGGRYGLSSHMKWNESEASIGRVLAVEVLHGFATEGAHCSKVREILDAS 2505
Query: 1432 DVWSAYKDQKHDLFLPSNAQSSAAGVAGLIESSSSRLTYALTAPPP 1477
+VWSAYKDQKHDLFLPSN Q SAAGVAG IE+SS+ LTYALTAPPP
Sbjct: 2506 EVWSAYKDQKHDLFLPSNTQ-SAAGVAGFIENSSNSLTYALTAPPP 2550
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 29,166,897
Number of extensions: 1135668
Number of successful extensions: 3077
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3083
Number of HSP's successfully gapped: 1
Length of query: 1507
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1396
Effective length of database: 8,063,393
Effective search space: 11256496628
Effective search space used: 11256496628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)