BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0574700 Os10g0574700|J065040I12
(254 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32700.1 | chr1:11827588-11829444 FORWARD LENGTH=214 194 3e-50
AT4G17900.1 | chr4:9946046-9947697 FORWARD LENGTH=228 184 3e-47
AT5G46710.1 | chr5:18952839-18954484 REVERSE LENGTH=227 157 6e-39
AT1G76590.1 | chr1:28740875-28741894 FORWARD LENGTH=246 153 8e-38
AT1G21000.1 | chr1:7337919-7339088 FORWARD LENGTH=247 150 5e-37
AT2G27930.1 | chr2:11892369-11893488 FORWARD LENGTH=190 138 3e-33
AT1G43000.1 | chr1:16140816-16141655 FORWARD LENGTH=217 132 1e-31
AT1G31040.1 | chr1:11069793-11072182 REVERSE LENGTH=244 100 1e-21
AT2G12646.1 | chr2:5167179-5169022 REVERSE LENGTH=257 99 3e-21
AT3G60670.1 | chr3:22424695-22426074 REVERSE LENGTH=246 92 2e-19
AT2G01818.1 | chr2:353552-355370 REVERSE LENGTH=223 64 7e-11
>AT1G32700.1 | chr1:11827588-11829444 FORWARD LENGTH=214
Length = 213
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 127/219 (57%), Gaps = 15/219 (6%)
Query: 37 EQWPRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRD 96
+ +P WL PLL FF QCK+HADSH+S ECNM+ H+D
Sbjct: 9 KTYPHWLKPLLREKFFVQCKLHADSHKS-ECNMYCLDCTNGPLCSLCLSF-------HKD 60
Query: 97 HHTIQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICE 156
HH IQIRRSSYHDVIRVS+IQ+F+DI GVQTYVINSA+VVFLNERPQ + GKG V N CE
Sbjct: 61 HHAIQIRRSSYHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKG-VINTCE 119
Query: 157 VCSRSLLDNFRFCSLGCKVVGCSPXXXXXXXXXXXXXXXXXXXXXXXXXXSTSD-SDNST 215
VC RSL+D+FRFCSLGCK+ G S D +NS
Sbjct: 120 VCYRSLVDSFRFCSLGCKISGISKKKRKEWTNNLSDSDDSYSSTSIGRLKKNDDIMNNSF 179
Query: 216 SPAKRSFXXXXXXXXXXXXXKRRKGIPHRAPFGSLIVEY 254
+P+ KRRKGIPHRAPFG LI+EY
Sbjct: 180 TPSTPPL-----SAVNRRIAKRRKGIPHRAPFGGLIIEY 213
>AT4G17900.1 | chr4:9946046-9947697 FORWARD LENGTH=228
Length = 227
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 135/250 (54%), Gaps = 25/250 (10%)
Query: 1 MAI-DHESPFKELRLKNRRIMXXXXXXXXXXXAVAHGEQWPRWLSPLLSASFFSQCKVHA 59
MAI D E+ +E++ KNRRIM +WP WL PLL FF CK H
Sbjct: 1 MAIEDQENTIREIKPKNRRIMGAGGPEEEE-------NRWPPWLKPLLKEQFFVHCKFHG 53
Query: 60 DSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDHHTIQIRRSSYHDVIRVSDIQRF 119
DSH+S ECNM+ +H+DH TIQIRRSSYHDVIRV++IQ++
Sbjct: 54 DSHKS-ECNMYCLDCTNGPLCSLCLA-------HHKDHRTIQIRRSSYHDVIRVNEIQKY 105
Query: 120 MDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICEVCSRSLLDN-FRFCSLGCKVVGC 178
+DIGG+QTYVINSA+VVFLNERPQ + GKG V N C+VC RSL+D+ FRFCSLGCK+ G
Sbjct: 106 LDIGGIQTYVINSAKVVFLNERPQPRPGKG-VTNTCKVCYRSLVDDSFRFCSLGCKIAGT 164
Query: 179 SPXXXXXXXXXXXXXXXXXXXXXXXXXXSTSDSDNSTSPAKRSFXXXXXXXXXXXXXKRR 238
S + S + ++P KRR
Sbjct: 165 SRGFEKGRENLLMETEDSSSSIAIGKNITNLQSFSPSTPP-------LTTSSNCRIVKRR 217
Query: 239 KGIPHRAPFG 248
KGIPHR+P G
Sbjct: 218 KGIPHRSPMG 227
>AT5G46710.1 | chr5:18952839-18954484 REVERSE LENGTH=227
Length = 226
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 128/254 (50%), Gaps = 36/254 (14%)
Query: 1 MAI-DHESPFKELRLKNRRIMXXXXXXXXXXXAVAHGE-QWPRWLSPLLSASFFSQCKVH 58
MAI D+E+P +E++ KNRR M GE QWP WL PLL+ FF+QCK H
Sbjct: 1 MAIEDYENPNREIKPKNRRFM--------------EGENQWPIWLKPLLNQHFFAQCKFH 46
Query: 59 ADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDHHTIQIRRSSYHDVIRVSDIQR 118
R+ EC M+ H +H TIQIR SSYH+V +V +IQ+
Sbjct: 47 GHLPRT-ECKMYCLDCTNDSFCSLCLS-------EHENHRTIQIRISSYHNVTKVDEIQK 98
Query: 119 FMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICEVCSRSLLDN-FRFCSLGCKVVG 177
++DI +QTYVINS++V+FLNERPQ K GKG N C VC R L +N FRFCS+GCKV G
Sbjct: 99 YLDISSIQTYVINSSKVLFLNERPQSKPGKG-FTNACMVCYRGLAENCFRFCSIGCKVAG 157
Query: 178 CSPXXXXXXXXXXXXXXXXXXXXXXXXXXSTSDSDNST----SPAKRSFXXXXXXXXXXX 233
S S +++ NS SP F
Sbjct: 158 TSGVFQKRVKHTTNDSDNSNNSSGVENNSSGAENGNSNLQSLSPPTPQF------PPRSL 211
Query: 234 XXKRRKGIPHRAPF 247
+ RKGIPHRAPF
Sbjct: 212 RKRLRKGIPHRAPF 225
>AT1G76590.1 | chr1:28740875-28741894 FORWARD LENGTH=246
Length = 245
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%), Gaps = 9/138 (6%)
Query: 40 PRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDHHT 99
P WL P+L A++F C +HA S++S ECNMF NHR+H
Sbjct: 18 PPWLIPMLRANYFIPCSIHAASNKS-ECNMFCLDCSSEAFCSYCLL-------NHRNHRV 69
Query: 100 IQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICEVCS 159
+QIRRSSYH+V+RV++IQ+++DI VQTY+INSAR+VFLNERPQ + GKG V N CE+C
Sbjct: 70 LQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKG-VTNTCEICC 128
Query: 160 RSLLDNFRFCSLGCKVVG 177
RSLLD+FRFCSLGCK+ G
Sbjct: 129 RSLLDSFRFCSLGCKLGG 146
>AT1G21000.1 | chr1:7337919-7339088 FORWARD LENGTH=247
Length = 246
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 9/138 (6%)
Query: 40 PRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDHHT 99
P WL P+L S+F C +H DS+++ ECN+F H+DH
Sbjct: 16 PPWLMPMLRGSYFVPCSIHVDSNKN-ECNLFCLDCAGNAFCSYCLV-------KHKDHRV 67
Query: 100 IQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICEVCS 159
+QIRRSSYH+V+RV++IQ+F+DI VQTY+INSA++VFLNERPQ + GKG V N CE+C
Sbjct: 68 VQIRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKG-VTNTCEICC 126
Query: 160 RSLLDNFRFCSLGCKVVG 177
RSLLD+FRFCSLGCK+ G
Sbjct: 127 RSLLDSFRFCSLGCKLGG 144
>AT2G27930.1 | chr2:11892369-11893488 FORWARD LENGTH=190
Length = 189
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 106/220 (48%), Gaps = 40/220 (18%)
Query: 38 QWPRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDH 97
+ P+WL LL +FFS C H ++ R+ ECNMF H DH
Sbjct: 2 EEPKWLEGLLRTNFFSICPRHRETPRN-ECNMFCLSCQNAAFCFYCRSSF------HIDH 54
Query: 98 HTIQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVAN---- 153
+QIRRSSYHDV+RVS+I+ +DI GVQTYVINSARV+FLNERPQ K A+
Sbjct: 55 PVLQIRRSSYHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPK 114
Query: 154 ----ICEVCSRSLLDNFRFCSLGCKVVGCSPXXXXXXXXXXXXXXXXXXXXXXXXXXSTS 209
CE C R+LLD FRFCSLGCKV G
Sbjct: 115 TMSYFCETCCRTLLDPFRFCSLGCKVEG--------------MRKNKEEEEERLRKERQQ 160
Query: 210 DSDNSTSPAKRSFXXXXXXXXXXXXXKRRKGIPHRAPFGS 249
++ T P + +RRKGIPHRAPF S
Sbjct: 161 ETHKGTHPPTHT-----------SNSRRRKGIPHRAPFAS 189
>AT1G43000.1 | chr1:16140816-16141655 FORWARD LENGTH=217
Length = 216
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 90/138 (65%), Gaps = 9/138 (6%)
Query: 40 PRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDHHT 99
P WL+P+L A +F C +H+ S +S ECN+F +HR H
Sbjct: 9 PPWLTPMLRADYFVTCSIHSQSSKS-ECNLFCLDCSGNAFCSSCLA-------HHRTHRV 60
Query: 100 IQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICEVCS 159
IQIRRSSYH+V+RVS+IQ+ +DI +QTYVINSA++ FLN RPQ + GK ++ C++CS
Sbjct: 61 IQIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGK-SLNKTCQICS 119
Query: 160 RSLLDNFRFCSLGCKVVG 177
R+LLD+F FCSL CK+ G
Sbjct: 120 RNLLDSFLFCSLACKLEG 137
>AT1G31040.1 | chr1:11069793-11072182 REVERSE LENGTH=244
Length = 243
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 11/136 (8%)
Query: 40 PRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDHHT 99
P WL L++ +FFS C +H ++ R E N+F +HR H
Sbjct: 19 PAWLEGLMAETFFSSCGIH-ETRRKSEKNVFCLLCCLSVCPHCLP--------SHRSHPL 69
Query: 100 IQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICEVCS 159
+Q+RR YHDV+R+SD+++ +D VQ Y IN A+V+FLN+R Q +A +N+C C
Sbjct: 70 LQVRRYVYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRA--KVSSNVCFTCD 127
Query: 160 RSLLDNFRFCSLGCKV 175
R L + F FCSL CKV
Sbjct: 128 RILQEPFHFCSLSCKV 143
>AT2G12646.1 | chr2:5167179-5169022 REVERSE LENGTH=257
Length = 256
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 36 GEQWPRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHR 95
G Q P WL L + FF C H ++ + E N+ +HR
Sbjct: 2 GIQKPAWLDALYAEKFFVGCPYH-ETAKKNERNVCCLDCCTSLCPHCVP--------SHR 52
Query: 96 DHHTIQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANIC 155
H +Q+RR YHDV+R+ D+Q+ +D VQ Y INSA+VVF+ +RPQ++ KGA N C
Sbjct: 53 FHRLLQVRRYVYHDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGA-GNYC 111
Query: 156 EVCSRSLLDNFRFCSLGCKV 175
C RSL + + CSLGCKV
Sbjct: 112 TSCDRSLQEPYIHCSLGCKV 131
>AT3G60670.1 | chr3:22424695-22426074 REVERSE LENGTH=246
Length = 245
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 38 QWPRWLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDH 97
++P WL LL FF+ C H D + E N+ +H H
Sbjct: 5 EFPAWLEVLLKDKFFNACLDHEDDKK-NEKNILCIDCCLTICPHCL--------SSHTSH 55
Query: 98 HTIQIRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHKAGKGAVANICEV 157
+QIRR Y DV+RV D + MD +Q Y NS++VVF+NERPQ + +G+ NIC
Sbjct: 56 RLLQIRRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGS-GNICIT 114
Query: 158 CSRSLLDNFRFCSLGCKV 175
C RSL + FC L CK+
Sbjct: 115 CDRSLQSPYLFCCLSCKI 132
>AT2G01818.1 | chr2:353552-355370 REVERSE LENGTH=223
Length = 222
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 42 WLSPLLSASFFSQCKVHADSHRSGECNMFXXXXXXXXXXXXXXXXXXXXXHNHRDHHTIQ 101
W+ LL++ FF C H R E N+F +H H +Q
Sbjct: 13 WIETLLNSEFFGICMNHK-YLRKNEKNVFCIDCNVEICRHCCNTVT----DSHFLHRRLQ 67
Query: 102 IRRSSYHDVIRVSDIQRFMDIGGVQTYVINSARVVFLNERPQHK----AGKGAVANICEV 157
I + Y DVIR+ +IQ + D +QTY IN + + LN RPQ K + K C
Sbjct: 68 ICKYVYQDVIRLLEIQNYFDCSEIQTYKINGEKAIHLNSRPQAKDARPSTKAKNGASCVT 127
Query: 158 CSRSLLDNFR-FCSLGCKV 175
C R + D+ FCS+ CK+
Sbjct: 128 CKRYIQDHPNLFCSISCKI 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,929,766
Number of extensions: 110655
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 11
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)