BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0564200 Os10g0564200|AK072487
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373 79 4e-15
AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311 69 4e-12
AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322 63 2e-10
AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297 62 5e-10
AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543 58 8e-09
AT5G05550.2 | chr5:1639529-1640550 REVERSE LENGTH=250 55 6e-08
AT1G54060.1 | chr1:20180972-20182123 FORWARD LENGTH=384 55 6e-08
AT3G11100.1 | chr3:3476490-3477320 REVERSE LENGTH=250 55 7e-08
AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444 54 1e-07
>AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373
Length = 372
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Query: 52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKI 111
CW+ EET+ALI+AYRD+W L +GNL+A+ W++VA AV A C K+ VQCRHK+
Sbjct: 63 CWSLEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVGANCPDV--ILKKTAVQCRHKM 120
Query: 112 EKL 114
EKL
Sbjct: 121 EKL 123
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 258 LRAVGDKFLRMEERRLEISLQIEKERMESEMKRTQTLLDAQQLFVEAF 305
++ +GD +R E+ R+E++ +IE RM++EMKRT+ +L++QQ VEAF
Sbjct: 305 IKLLGDTLVRTEQTRMEMTREIEAMRMDTEMKRTKMILESQQRIVEAF 352
>AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311
Length = 310
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKI 111
WT +ETL LIE+Y+++W + +G L+++ W+++A A ++R G ++ QCRHKI
Sbjct: 64 LWTQDETLLLIESYKEKWFAIGRGPLKSTHWEEIAVAASSRSG-----VERTSTQCRHKI 118
Query: 112 EKLXXXXXXXXXXXXXXSKGP--KWPFFPLLHDLAGGGAPDPSPNPIIKI 159
EK+ S GP WPF+ + +L S P+ ++
Sbjct: 119 EKM-----RKRFRSERQSMGPISIWPFYNQMEELDSSNPAPISARPLTRL 163
>AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322
Length = 321
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTAR---CGRFPTAT----HKSG 104
CW+ E T LI+A+ +R+ L +GNLR W +VA AV R GR +A +++
Sbjct: 25 CWSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTGRNVSAAKSQPYRTD 84
Query: 105 VQCRHKIEKLXXXXXXXXXXXXXXSKG---PKWPFFPLLHDLAGGGAPDPSPNP 155
VQC+++I+ L + G WPFF L DL P S NP
Sbjct: 85 VQCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFFSALDDLLRESFPT-SSNP 137
>AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297
Length = 296
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 53 WTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKIE 112
W+ L+EAY +W + L+ DW+DVA V++R T + K+ QC++KIE
Sbjct: 38 WSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATH--TKSPKTQTQCKNKIE 95
Query: 113 KLXXXXXXXXXXXXXXSKGPKWPFFPLLHDLAGGGAPDPSPNPII 157
+ + G WP +P L L G P P P ++
Sbjct: 96 SM----KKRYRSESATADGSSWPLYPRLDHLLRGTQPQPQPQAVL 136
>AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543
Length = 542
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 53 WTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKIE 112
W+ L++AY D++ L +GNLR DW++VA +V+ RC + KS QC++KI+
Sbjct: 161 WSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSERCEKLS----KSVEQCKNKID 216
Query: 113 KLXX-XXXXXXXXXXXXSKGPKWPFFPLLHDLAG 145
L + WP+F + D+ G
Sbjct: 217 NLKKRYKLERHRMSSGGTAASHWPWFKKMEDIVG 250
>AT5G05550.2 | chr5:1639529-1640550 REVERSE LENGTH=250
Length = 249
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 53 WTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKIE 112
W+ E T L+EA+ +R+ L GNLR +DW DVA AV +R G + K+ +QC+++++
Sbjct: 24 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHG--DNSRKKTDLQCKNRVD 81
Query: 113 KL 114
L
Sbjct: 82 TL 83
>AT1G54060.1 | chr1:20180972-20182123 FORWARD LENGTH=384
Length = 383
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVT-ARCGRFPTATHKSGVQCRHK 110
CW+ E T LIEA+ DR+ KG L+ W +VA V +R ++P K+ +QC+++
Sbjct: 93 CWSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIVNKSRQCKYP----KTDIQCKNR 148
Query: 111 IEKLXXXXXXXXXXXXXXSKGPKWPFFPLLHDLAGG 146
I+ + KW FF L L GG
Sbjct: 149 IDTVKKKYKQEKAKIASGDGPSKWVFFKKLESLIGG 184
>AT3G11100.1 | chr3:3476490-3477320 REVERSE LENGTH=250
Length = 249
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 53 WTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKIE 112
W+ + T LIEA+ DR+ L +GNLR +DW +VA AV + G K+ VQC+++I+
Sbjct: 22 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNSSHG---NGRPKTDVQCKNRID 78
Query: 113 KL 114
L
Sbjct: 79 TL 80
>AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444
Length = 443
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTAR--CGRFPTATHKSGVQCRH 109
CW+ T LI+A+ +R+ L +GNL+ W +VA V++R G+ P K+ +QC++
Sbjct: 83 CWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSREDYGKIP----KTDIQCKN 138
Query: 110 KIEKLXXXXXXXXXXXXXXSKGPKWPFFPLLHDLAGGGAPDPS 152
+I+ + +W FF L L G A P+
Sbjct: 139 RIDTVKKKYKQEKVRIANGGGRSRWVFFDKLDRLIGSTAKIPT 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,802,230
Number of extensions: 106789
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 10
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)