BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0563100 Os10g0563100|Os10g0563100
         (390 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47680.1  | chr3:17577483-17578391 REVERSE LENGTH=303           62   5e-10
AT5G41220.1  | chr5:16494560-16496969 REVERSE LENGTH=591           48   7e-06
AT5G41240.1  | chr5:16498293-16500811 REVERSE LENGTH=592           48   9e-06

>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
          Length = 302

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 155 KREVKHLKDRWQRIKRWVGFFCASWKKAALVYTSGYSDDQLRDFANQFYVDDYPNEGPFT 214
           KRE  H+K RW +I   VG F  S++ A    +SG +DD +   A++ Y  ++   G FT
Sbjct: 99  KRETGHIKQRWTKINEGVGKFVGSYEAATKQKSSGQNDDDVVALAHEIYNSEH---GKFT 155

Query: 215 VLHCWKVLRDEPKW 228
           + H W+VLR E KW
Sbjct: 156 LEHAWRVLRFEQKW 169



>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
          Length = 590

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 155 KREVKHLKDRWQRIKRWVGFFCASWKKAALVYTSGYSDDQLRDFANQFYVDDYPNEGPFT 214
           KRE  H K RW ++   V  F   + +A    +SG S+D +   A Q Y ++Y  +  FT
Sbjct: 322 KREPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVYTNNY--KSNFT 379

Query: 215 VLHCWKVLRDEPKW 228
           + H W+ LR   KW
Sbjct: 380 LEHAWRELRHSKKW 393



>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
          Length = 591

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 155 KREVKHLKDRWQRIKRWVGFFCASWKKAALVYTSGYSDDQLRDFANQFYVDDYPNEGPFT 214
           KRE  H + RW++I  +V  F   + +A     SG S+D +   A Q Y ++Y +   F 
Sbjct: 324 KREWNHCRQRWRKINDYVCKFVGCYDQALNQRASGQSEDDVFQVAYQLYYNNYMSN--FK 381

Query: 215 VLHCWKVLRDEPKW 228
           + H W+ LR   KW
Sbjct: 382 LEHAWRELRHNKKW 395



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,451,919
Number of extensions: 302694
Number of successful extensions: 702
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 290
Effective length of database: 8,364,969
Effective search space: 2425841010
Effective search space used: 2425841010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)