BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0561900 Os10g0561900|AK101939
(362 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35680.1 | chr2:14997004-14998590 REVERSE LENGTH=338 293 1e-79
AT5G56610.1 | chr5:22916738-22918137 FORWARD LENGTH=229 249 2e-66
>AT2G35680.1 | chr2:14997004-14998590 REVERSE LENGTH=338
Length = 337
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/280 (53%), Positives = 195/280 (69%), Gaps = 13/280 (4%)
Query: 54 AKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKELGV 113
KRA VGVGAR LFYPTLVYNVVRN+ E F WWD+V E +LLGAVPFPSDV +LKELGV
Sbjct: 41 TKRALVGVGARALFYPTLVYNVVRNKLESEFRWWDRVAEFILLGAVPFPSDVPQLKELGV 100
Query: 114 CGVVTLNESYERLVPRCLYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGKLT 173
CGV+TLNE YE LVP LY+++ I++LV+ TRDY +APS E +C+A +FIHRNA GK T
Sbjct: 101 CGVITLNEPYETLVPSSLYKSYCIDHLVIATRDYCFAPSMEAICQAVEFIHRNASLGKTT 160
Query: 174 YVHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFYQLRVK 233
YVHCKAGRGRSTT+V+CYLVQ+K MTP AY +VR RPRVLLA+AQ +AV ++Y ++V
Sbjct: 161 YVHCKAGRGRSTTIVICYLVQHKNMTPEAAYSYVRSIRPRVLLAAAQWKAVVEYYHVKVL 220
Query: 234 KSGKSICLDSPIMKPPLF--LATRNLIAFDEKTFVMVSKSDLEGYDAD------TLAVNV 285
+ + + + P + + N++ FD+ + V+V+ SDLEGY+ D ++ VN
Sbjct: 221 NTQSCLTDATSALIPRNVKQVCSGNVVVFDDGSMVVVTHSDLEGYNDDDSRSRRSVKVN- 279
Query: 286 GSGLW----EISLVYRVXXXXXXXXXXXXYLWVRCRAPRK 321
G+ LW ++S+VYRV LW+ R +K
Sbjct: 280 GNELWAAAADLSMVYRVKVVGQAAMARISCLWLGLREDQK 319
>AT5G56610.1 | chr5:22916738-22918137 FORWARD LENGTH=229
Length = 228
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 144/178 (80%)
Query: 54 AKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKELGV 113
AKRA +G G R+LFYPTL+YN+VR + + F WWDQ+DE++L+GAVPF DV RLK+LGV
Sbjct: 34 AKRALIGAGGRILFYPTLLYNLVRFKLQSQFRWWDQIDEYLLMGAVPFRKDVPRLKKLGV 93
Query: 114 CGVVTLNESYERLVPRCLYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGKLT 173
GV+TLNE YE LVP LY A+ +E+LV+PTRDYL+APS ++ A +FIH+NAL GK T
Sbjct: 94 GGVITLNEPYETLVPSSLYSAYEMEHLVIPTRDYLFAPSIVDITLAVNFIHKNALLGKTT 153
Query: 174 YVHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFYQLR 231
YVHCKAGRGRSTTVVLCYL+++K MT A A+EHVR RPRVLL +QR+ VE+F +L+
Sbjct: 154 YVHCKAGRGRSTTVVLCYLIEHKSMTVAAAFEHVRSIRPRVLLHPSQRKVVEEFSRLQ 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,833,132
Number of extensions: 260581
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,364,969
Effective search space: 2191621878
Effective search space used: 2191621878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)