BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0557900 Os10g0557900|J065019I07
(355 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16640.1 | chr4:9367396-9368490 REVERSE LENGTH=365 280 1e-75
AT2G45040.1 | chr2:18577693-18578721 FORWARD LENGTH=343 261 5e-70
AT1G70170.1 | chr1:26424005-26425141 FORWARD LENGTH=379 219 1e-57
AT1G24140.1 | chr1:8536131-8537285 REVERSE LENGTH=385 209 2e-54
AT1G59970.1 | chr1:22073601-22074683 FORWARD LENGTH=361 205 3e-53
>AT4G16640.1 | chr4:9367396-9368490 REVERSE LENGTH=365
Length = 364
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/284 (49%), Positives = 180/284 (63%), Gaps = 12/284 (4%)
Query: 36 WHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSL 95
WH F +L+D GSHV+G++ELKRYL RFGY+ +D FD LE A+ YQ L
Sbjct: 52 WHDFSRLVDVQIGSHVSGVSELKRYLHRFGYVNDGSEIFSDVFDGPLESAISLYQENLGL 111
Query: 96 PVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDP 155
P+TGRLD +T+ + PRCGV D + + + +T+F G+P+W R
Sbjct: 112 PITGRLDTSTVTLMSLPRCGVSDTHMTINNDFLHT-------TAHYTYFNGKPKWNRD-- 162
Query: 156 PIVLSYAVSPTATVGYLPPXXXXXXXXXXXXXXXXTIPVGFVETDDYEAADIKVGFYAGN 215
L+YA+S T + YL IPV F E DD+ AD+K+GFYAG+
Sbjct: 163 --TLTYAISKTHKLDYLTSEDVKTVFRRAFSQWSSVIPVSFEEVDDFTTADLKIGFYAGD 220
Query: 216 HGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFDVDATAS-AIDLESVATHEIGHV 274
HGDG+PFDG LG L HAF+P+NGRLHLDA+E W VD D+ ++ A+DLESVATHEIGH+
Sbjct: 221 HGDGLPFDGVLGTLAHAFAPENGRLHLDAAETWIVDDDLKGSSEVAVDLESVATHEIGHL 280
Query: 275 LGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALYGSNPQF 318
LGLGHS+ AVMYPS++PR KKV LTVDDV GV LYG NP+
Sbjct: 281 LGLGHSSQESAVMYPSLRPRTKKVDLTVDDVAGVLKLYGPNPKL 324
>AT2G45040.1 | chr2:18577693-18578721 FORWARD LENGTH=343
Length = 342
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 178/286 (62%), Gaps = 20/286 (6%)
Query: 40 KQLLDAGRGSHVT-------GLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTR 92
+Q+++A S T + E+KR+L ++GY+ P +D D E A+ RYQ
Sbjct: 29 QQIIEARNPSQFTTNPSPDVSIPEIKRHLQQYGYL--PQNKESD--DVSFEQALVRYQKN 84
Query: 93 FSLPVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTR 152
LP+TG+ D+ TL QI+ PRCG DD V +P G ++ +F G PRWTR
Sbjct: 85 LGLPITGKPDSDTLSQILLPRCGFPDD-----VEPKTAPFHTG---KKYVYFPGRPRWTR 136
Query: 153 SDPPIVLSYAVSPTATVGYLPPXXXXXXXXXXXXXXXXTIPVGFVETDDYEAADIKVGFY 212
D P+ L+YA S YL P IPV F+ET+DY ADIK+GF+
Sbjct: 137 -DVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFGKWASVIPVSFIETEDYVIADIKIGFF 195
Query: 213 AGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFDVDATASAIDLESVATHEIG 272
G+HGDG PFDG LG+L H FSP+NGRLHLD +E WAVDFD + ++ A+DLESVA HEIG
Sbjct: 196 NGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAETWAVDFDEEKSSVAVDLESVAVHEIG 255
Query: 273 HVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALYGSNPQF 318
HVLGLGHS+ A MYP++KPR KKV L +DDV GVQ+LYG+NP F
Sbjct: 256 HVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVVGVQSLYGTNPNF 301
>AT1G70170.1 | chr1:26424005-26425141 FORWARD LENGTH=379
Length = 378
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 166/302 (54%), Gaps = 32/302 (10%)
Query: 36 WHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKP-GRDTTDAFDEHLEVAVRRYQTRFS 94
W +F G +V GL +K+Y RFGY+ + + TD FD+ L+ AV YQT F+
Sbjct: 41 WDAFSNFTGCHHGQNVDGLYRIKKYFQRFGYIPETFSGNFTDDFDDILKAAVELYQTNFN 100
Query: 95 LPVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSPGAQGG---------------VVS 139
L VTG LD T+ I+ PRCG + DV S+ GG V
Sbjct: 101 LNVTGELDALTIQHIVIPRCG--NPDVVNGTSLM-----HGGRRKTFEVNFSRTHLHAVK 153
Query: 140 RFTFFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPXXXXXXXXXXXXXXXXTIPVGFVET 199
R+T F GEPRW R+ L+YA P + + F +
Sbjct: 154 RYTLFPGEPRWPRNRRD--LTYAFDPKNPL----TEEVKSVFSRAFGRWSDVTALNFTLS 207
Query: 200 DDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFDVDATAS 259
+ + +DI +GFY G+HGDG PFDG LG L HAFSP +G+ HLDA E+W V D+D+ S
Sbjct: 208 ESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLDADENWVVSGDLDSFLS 267
Query: 260 ---AIDLESVATHEIGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALYGSNP 316
A+DLESVA HEIGH+LGLGHS+ ++MYP+I ++KV LT DDVEG+Q LYG+NP
Sbjct: 268 VTAAVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDLTNDDVEGIQYLYGANP 327
Query: 317 QF 318
F
Sbjct: 328 NF 329
>AT1G24140.1 | chr1:8536131-8537285 REVERSE LENGTH=385
Length = 384
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 157/300 (52%), Gaps = 25/300 (8%)
Query: 36 WHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKPGR--DTTDAFDEHLEVAVRRYQTRF 93
W+SF G GL LK+Y FGY+ + + TD FD+ L+ AV YQ F
Sbjct: 43 WNSFLNFTGCHAGKKYDGLYMLKQYFQHFGYITETNLSGNFTDDFDDILKNAVEMYQRNF 102
Query: 94 SLPVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSP-----------GAQGGVVSRFT 142
L VTG LD TL ++ PRCG + DV S S G + V ++
Sbjct: 103 QLNVTGVLDELTLKHVVIPRCG--NPDVVNGTSTMHSGRKTFEVSFAGRGQRFHAVKHYS 160
Query: 143 FFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPXXXXXXXXXXXXXXXXTIPVGFVETDDY 202
FF GEPRW R+ L+YA P + P+ F + +
Sbjct: 161 FFPGEPRWPRNRRD--LTYAFDPRNAL----TEEVKSVFSRAFTRWEEVTPLTFTRVERF 214
Query: 203 EAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFD----VDATA 258
+DI +GFY+G HGDG PFDGP+ L HAFSP G HLD E+W V + + +
Sbjct: 215 STSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLDGEENWIVSGEGGDGFISVS 274
Query: 259 SAIDLESVATHEIGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALYGSNPQF 318
A+DLESVA HEIGH+LGLGHS+ ++MYP+I+ +KV LT DDVEGVQ LYG+NP F
Sbjct: 275 EAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVDLTTDDVEGVQYLYGANPNF 334
>AT1G59970.1 | chr1:22073601-22074683 FORWARD LENGTH=361
Length = 360
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 160/282 (56%), Gaps = 15/282 (5%)
Query: 36 WHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSL 95
W +F +L G ++ GL++LK+Y RFGY+ G + TD FD+ L+ A+ YQ F+L
Sbjct: 42 WETFSKLAGCHIGENINGLSKLKQYFRRFGYITTTG-NCTDDFDDVLQSAINTYQKNFNL 100
Query: 96 PVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDP 155
VTG+LD++TL QI+ PRCG + D+ VS ++ G +++FF G+PRW +
Sbjct: 101 KVTGKLDSSTLRQIVKPRCG--NPDLIDGVS-EMNGGKILRTTEKYSFFPGKPRWPKRKR 157
Query: 156 PIVLSYAVSPTATVGYLPPXXXXXXXXXXXXXXXXTIPVGFVETDDYEAADIKVGFYAGN 215
L+YA +P + P+ F ++ ADI +GF++G
Sbjct: 158 D--LTYAFAPQNNL----TDEVKRVFSRAFTRWAEVTPLNFTRSESILRADIVIGFFSGE 211
Query: 216 HGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFD-----VDATASAIDLESVATHE 270
HGDG PFDG +G L HA SP G LHLD E W + + + +DLESVA HE
Sbjct: 212 HGDGEPFDGAMGTLAHASSPPTGMLHLDGDEDWLISNGEISRRILPVTTVVDLESVAVHE 271
Query: 271 IGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALY 312
IGH+LGLGHS+ A+M+P+I ++KV L DD+EG+Q LY
Sbjct: 272 IGHLLGLGHSSVEDAIMFPAISGGDRKVELAKDDIEGIQHLY 313
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,638,427
Number of extensions: 265902
Number of successful extensions: 493
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 5
Length of query: 355
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,364,969
Effective search space: 2133067095
Effective search space used: 2133067095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)