BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0546300 Os10g0546300|AK103033
(1074 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27900.1 | chr2:11877654-11885238 FORWARD LENGTH=1125 1060 0.0
>AT2G27900.1 | chr2:11877654-11885238 FORWARD LENGTH=1125
Length = 1124
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/1092 (53%), Positives = 743/1092 (68%), Gaps = 69/1092 (6%)
Query: 40 FLPLLLIQGGG-MDLSRVGEKLLSSVRSARSLGLLXXXXXXXXXXXXXXXXXXXXXXXXX 98
LP LL QG G MDLS+VGEK LSSV+SA SLGLL
Sbjct: 42 LLPFLLSQGTGVMDLSKVGEKFLSSVKSATSLGLLPSPSISDRPEIPARAAAAAAVARAL 101
Query: 99 XXXXXXXHEKISLPSNSEDLVSIYGSNPQGHAVDELEEVFFQEEFDPIKYILQSIPA-EG 157
+++S+ S + +L SIYG+ P V+ELEE F++E+FDP+++IL+++P E
Sbjct: 102 AGLPSD--QRLSISSTATELNSIYGNRPLPQQVEELEEGFYEEDFDPVRHILENVPDDES 159
Query: 158 DSSYFDKQSTLRLAQLDKIAERLSHHVMGHHEEMVKGMQLVMELEQDLKVANVICMNGRR 217
+ +YF+KQ+TLRL QLDK+AE LSHHVM HHE MVKGM LV ELE+DLK+ANVIC NGRR
Sbjct: 160 ELAYFEKQATLRLVQLDKVAETLSHHVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRR 219
Query: 218 HVSSSKNEVSRDLVVNVKSKKKQALLDVLPILTELRNAQDMQMELESFVEKENYFQAFQL 277
+++SS NE SRDL+V+ SKKKQALLD+LPILT+LR+A+ MQ LE VE NY +AFQ+
Sbjct: 220 NLTSSMNEASRDLIVHTHSKKKQALLDMLPILTDLRHARVMQSNLEDLVEDGNYCKAFQV 279
Query: 278 LPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYAL 337
L EYLQ+L++ S S+ QEM RG+E WL RT+ KLD+ LLGVCQ F E+SY+ V+DAYAL
Sbjct: 280 LSEYLQLLDSLSEFSAAQEMTRGVEVWLGRTLHKLDSLLLGVCQEFKEDSYVMVLDAYAL 339
Query: 338 MGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRP 397
+GD+ G+AEK+QSFF+QEV+S+TH VLK ++ E+ TQ +R TYSDLC Q PE K R
Sbjct: 340 IGDVSGLAEKIQSFFMQEVISETHSVLKSIVGEDNSAATQYSRLTYSDLCLQTPESKFRQ 399
Query: 398 CLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGE-------------NSLTGRNNTSQ-- 442
CLLRT LF L+ SY+ IMSF P E E E +S+TG + Q
Sbjct: 400 CLLRTLAVLFQLIYSYHEIMSFTP-----EKEAEILVSPSLATTQMVDSVTGSSCDPQDG 454
Query: 443 ------------SADESLGDSGRGHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAA 490
SA+ES G SG + +++ + + N + S ++SP+Y LR ++A
Sbjct: 455 GLLPGSIPPCTISAEESDG-SGTSSSVQLASNIAIDESRNSEDRVSSSESPWYYLRKESA 513
Query: 491 KLVAHAFERGRRNLWQLAXXXXXXXXXXXXXXXXXXYQFLKNYEDLTIFILAGEAFCGFE 550
V+ +RGRRNLWQL +QFLKNYEDL+IFILAGEAFCGFE
Sbjct: 514 AFVSETLQRGRRNLWQLTTSRVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFE 573
Query: 551 ASEFRQKLKGICLNYSVAFHRQNIYALKMVLERESWTIMSAEASRIISLAGLTGDGAALI 610
+FR+KLKG+C NY AFHRQ+++ALKMVLE+E+WT +S + + I+ AGL GDGA LI
Sbjct: 574 VVDFREKLKGVCENYFTAFHRQSMHALKMVLEKETWTKLSPDTVQAINFAGLVGDGAPLI 633
Query: 611 ---SPTSRISTLPIHGSTMS---DTGKEKNGFAAWTKIENPFFYKVENGTTESPKSNMMF 664
S S P H S D ++GF+ W K NPF K+ + + S++
Sbjct: 634 ISSRSASGSSRFP-HSDKPSNSIDPSGNRSGFSYWLKSGNPFSAKLTHYREDQDYSSI-- 690
Query: 665 NSVD---NSSAHGSTNNG--------NGNKAPLDEENEDLLADFIDEDSQLPSRLAKTKI 713
N D N S H N NG ++ENEDLLADFIDEDSQLP R
Sbjct: 691 NGEDHEGNDSIHDDVVNPKIRDIKRINGGSPVSEDENEDLLADFIDEDSQLPRRSFTRSQ 750
Query: 714 VKGNSSHWK-DGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFKGICQLFGIFYHYI 772
+ +SSH+ + D+++QTGSSL LLR MDKYARLMQKLEIVN E FKGICQLFG+F++++
Sbjct: 751 SRTSSSHFSTNDDLTAQTGSSLCLLRSMDKYARLMQKLEIVNAEFFKGICQLFGVFFYFV 810
Query: 773 YETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIKXXXXXXX-------XXXXXX 825
++ FG ++ GK + D + RL+ LS+I+Q+ +QWIK
Sbjct: 811 FQVFGQENTNSGGKGVSDSFNHRLKSCLSRISQECEQWIKPHVSSSPSSSLAFPNTVHSL 870
Query: 826 MDVMPTAPPSSMFTLYG----LKERCAAAETISLVARVLNRSRAHLHSVLSQSNTSILEE 881
DV P +P ++ L G LKERCAA +T+SLVARVL++S+AHL S+L N S++E+
Sbjct: 871 ADVTPASPLNTSGHLSGVSFSLKERCAAVDTVSLVARVLHKSKAHLQSMLMSRNGSLVED 930
Query: 882 FFGTMVDSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLGEFK 941
FFG +V SVPDL EH+HRT+AR+LLH+NGY D+IAN+KWE+KELGMEHNGYVDL+LGEFK
Sbjct: 931 FFGQLVGSVPDLTEHLHRTTARILLHVNGYVDRIANSKWEIKELGMEHNGYVDLMLGEFK 990
Query: 942 HYKTRLDHGGISKELQDLLLEYGIDSIAEVLVEGLSRVKRCTDEGRALMSLDLQVLINGL 1001
HYKTRL HGGI +E+Q+LLLEYG++ AE+LVEGLSR+KRCTDEGR LMSLDLQVLINGL
Sbjct: 991 HYKTRLAHGGIPQEVQNLLLEYGVEIFAEMLVEGLSRIKRCTDEGRVLMSLDLQVLINGL 1050
Query: 1002 LHIVSANVRPKLQIVDTFIKAYYLPETEYVHWARSHPEYSKSQVVGLVNLVATMKGWKRK 1061
H V V+PKLQIV+TFIKAYYLPETEYVHWAR+HPEY+K+QVVGLVNLVATMKGWKRK
Sbjct: 1051 QHFVPTKVKPKLQIVETFIKAYYLPETEYVHWARAHPEYTKAQVVGLVNLVATMKGWKRK 1110
Query: 1062 TRLETIERIEAG 1073
TRLE IE+IE+
Sbjct: 1111 TRLEVIEKIESA 1122
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 21,054,304
Number of extensions: 876331
Number of successful extensions: 2747
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2739
Number of HSP's successfully gapped: 1
Length of query: 1074
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 965
Effective length of database: 8,118,225
Effective search space: 7834087125
Effective search space used: 7834087125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)