BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0545700 Os10g0545700|AK074009
         (160 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03455.1  | chr5:862592-863949 FORWARD LENGTH=147              173   4e-44

>AT5G03455.1 | chr5:862592-863949 FORWARD LENGTH=147
          Length = 146

 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 99/128 (77%), Gaps = 1/128 (0%)

Query: 27  SVSYVSAAKLLAMARSNPRVAIIDVRDEERSYQAHIGGSHHFSSRSFAARLPELARATGD 86
           S+SY+++ +LL + R  P +AIIDVRDEER+Y  HI GS H++S SF  ++  L +   D
Sbjct: 20  SISYITSTQLLPLHR-RPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKD 78

Query: 87  KDTVVFHCALSKVRGPSCAKMFSDYLSETKEESGTKNIMVLERGFNGWELSGQPVCRCTD 146
           KDT+VFHCALS+VRGP+CA+   +YL E KE++G KNIM+LERGFNGWE SG+PVCRC +
Sbjct: 79  KDTLVFHCALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE 138

Query: 147 APCKGTCS 154
            PCKG C+
Sbjct: 139 VPCKGDCA 146



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,127,093
Number of extensions: 110923
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)