BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0542100 Os10g0542100|AK063504
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23240.1  | chr2:9895995-9896325 REVERSE LENGTH=86              58   1e-09
AT2G42000.2  | chr2:17529410-17530364 REVERSE LENGTH=121           55   1e-08

>AT2G23240.1 | chr2:9895995-9896325 REVERSE LENGTH=86
          Length = 85

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 3  CDDKCGCAVPCPGGTGCRCASSARSGGGD--HTTCSCGDHCGCNPCRCGRESQPT 55
          C+D+CGC  PCPGG  CRC   + + GGD  H TC CG+HCGCNPC C +    T
Sbjct: 13 CNDRCGCPSPCPGGESCRCKMMSEASGGDQEHNTCPCGEHCGCNPCNCPKTQTQT 67



>AT2G42000.2 | chr2:17529410-17530364 REVERSE LENGTH=121
          Length = 120

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2   GCDDKCGCAVPCPGGTGCRC-ASSARSGGGDHTTCSCGDHCGCNPCRCGRESQPT 55
           GC+D CGC  PCPGG  CRC    A +G   H  C CG+HCGCNPC C +    T
Sbjct: 48  GCNDSCGCPSPCPGGNSCRCRMREASAGDQGHMVCPCGEHCGCNPCNCPKTQTQT 102



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.141    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,836,238
Number of extensions: 65986
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)