BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0535800 Os10g0535800|J100023H02
(137 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G63830.2 | chr1:23685408-23687098 FORWARD LENGTH=233 208 8e-55
AT4G23470.1 | chr4:12249289-12251079 FORWARD LENGTH=256 196 3e-51
AT5G41390.1 | chr5:16565576-16567253 FORWARD LENGTH=265 193 3e-50
>AT1G63830.2 | chr1:23685408-23687098 FORWARD LENGTH=233
Length = 232
Score = 208 bits (529), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 97/120 (80%), Positives = 105/120 (87%)
Query: 1 MAASQAYLDKAQLRQSYRNVWHTDLTNAITADFTCCCLSLWCGPCVSYMLRKRALYNDMS 60
MAASQ LDK +LRQ YRN+WH+DL +TAD CC+S CGPCVSYMLR+RALYNDMS
Sbjct: 1 MAASQDKLDKMKLRQDYRNLWHSDLMGTVTADTPYCCISCLCGPCVSYMLRRRALYNDMS 60
Query: 61 RYVCCAGYMPCSGRCGESNCPEVCLATEVFCCFGNSVASTRFLLQDEFNIQTTQCDNCII 120
RY CCAGYMPCSGRCGES CP++CLATEVF CFGNSVASTRFLLQDEFNIQTTQCDNCII
Sbjct: 61 RYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCII 120
>AT4G23470.1 | chr4:12249289-12251079 FORWARD LENGTH=256
Length = 255
Score = 196 bits (498), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 101/113 (89%)
Query: 8 LDKAQLRQSYRNVWHTDLTNAITADFTCCCLSLWCGPCVSYMLRKRALYNDMSRYVCCAG 67
++K +LR+++RNVWHTDLT++I D CC +LWC PC SY+LRKRALY+DMSRYVCCAG
Sbjct: 6 MEKMELRKNFRNVWHTDLTHSIQNDTPYCCFALWCAPCASYLLRKRALYDDMSRYVCCAG 65
Query: 68 YMPCSGRCGESNCPEVCLATEVFCCFGNSVASTRFLLQDEFNIQTTQCDNCII 120
YMPCSGRCGE+ CP++CLATEVFCCF NSVASTRFLLQDEF IQTT+CDNCII
Sbjct: 66 YMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTKCDNCII 118
>AT5G41390.1 | chr5:16565576-16567253 FORWARD LENGTH=265
Length = 264
Score = 193 bits (490), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 99/120 (82%)
Query: 1 MAASQAYLDKAQLRQSYRNVWHTDLTNAITADFTCCCLSLWCGPCVSYMLRKRALYNDMS 60
MA SQ LDK QLRQSYRN+WH+DL ++AD C S CGPCVSY+LRKRALYNDMS
Sbjct: 1 MARSQDKLDKMQLRQSYRNLWHSDLMGTVSADTPYCFFSCLCGPCVSYLLRKRALYNDMS 60
Query: 61 RYVCCAGYMPCSGRCGESNCPEVCLATEVFCCFGNSVASTRFLLQDEFNIQTTQCDNCII 120
RY CC GYMPCSG+CGES CP+ CLATEV CFGNSVASTRF+LQDEFNI TT+CDNCII
Sbjct: 61 RYTCCGGYMPCSGKCGESKCPQFCLATEVCLCFGNSVASTRFMLQDEFNIHTTKCDNCII 120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.136 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,645,187
Number of extensions: 96770
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 3
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 106 (45.4 bits)