BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0532600 Os10g0532600|AK060309
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184 85 3e-17
AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160 78 4e-15
AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222 67 8e-12
AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316 65 5e-11
AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297 53 1e-07
AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316 53 1e-07
AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321 52 3e-07
AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271 52 4e-07
AT5G22240.1 | chr5:7364689-7365279 FORWARD LENGTH=197 51 8e-07
>AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184
Length = 183
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 48/64 (75%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYE 226
DP DFR+SMLQMI+E EI +LRELLH FL LN P+HH +I+RAF+EIW+ VF+ +
Sbjct: 96 DPYLDFRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEIWDGVFSAAK 155
Query: 227 RTPD 230
R D
Sbjct: 156 RRGD 159
>AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160
Length = 159
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEE 220
DP DFR+SMLQMI+E +I ELRELL FL LNS +HH +I+RAF+EIWE+
Sbjct: 76 DPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEIWED 129
>AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222
Length = 221
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFA 223
DP DFR SM++MIVE++I AEL++LL FL LNS HH VI++ F EI+ +F+
Sbjct: 164 DPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIYATLFS 220
>AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316
Length = 315
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIW 218
DP DF+ SM++MIVEK++ AEL +LL FL LN+ HH I+RAF+EIW
Sbjct: 236 DPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSEIW 287
>AT5G58360.1 | chr5:23590079-23590969 REVERSE LENGTH=297
Length = 296
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAG 224
DP DFR SM++MI+E ++ +L +LL +L LNS +H VI++AF W + G
Sbjct: 234 DPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAFENTWLHLTQG 291
>AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316
Length = 315
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAG 224
DP DFR SM++MI E I ++ +LL +L LN +H +I++ F ++W EV
Sbjct: 253 DPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQVWLEVINS 310
>AT2G30400.1 | chr2:12956592-12957554 FORWARD LENGTH=321
Length = 320
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIW 218
DP DFR SM++MI E I +L +LL +L LN +H +I+ F +IW
Sbjct: 262 DPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQIW 313
>AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271
Length = 270
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIW 218
DP DF+ SM +MI E +I +L ELL +L LNS +H +I+ F +IW
Sbjct: 208 DPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIW 259
>AT5G22240.1 | chr5:7364689-7365279 FORWARD LENGTH=197
Length = 196
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 167 DPLFDFRRSMLQMIVEKEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFAGYE 226
+P D+++SM QMI E+ I +EL+ELL FL +N H++I+RAF ++ + ++
Sbjct: 106 NPFEDYKKSMNQMIEERYIETESELKELLRCFLDINPSPQHNLIVRAFVDVCSHLQPPHD 165
Query: 227 R 227
R
Sbjct: 166 R 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,151,874
Number of extensions: 89690
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 9
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)