BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0522000 Os10g0522000|J065019G08
(78 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00750.1 | chr4:314405-317507 FORWARD LENGTH=634 62 8e-11
AT4G18030.1 | chr4:10012850-10015267 REVERSE LENGTH=622 49 5e-07
AT1G26850.1 | chr1:9301146-9303432 REVERSE LENGTH=617 49 5e-07
AT1G33170.1 | chr1:12027262-12030397 FORWARD LENGTH=640 49 6e-07
AT2G45750.1 | chr2:18842655-18845343 FORWARD LENGTH=632 49 6e-07
AT4G10440.1 | chr4:6459728-6461932 REVERSE LENGTH=634 47 3e-06
>AT4G00750.1 | chr4:314405-317507 FORWARD LENGTH=634
Length = 633
Score = 61.6 bits (148), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 2 RCDMEDILLEMDRILRPGXXXXXXXXXXXXXXXKNFLTDRMRWDCQIFDGEDGSDDREKI 61
RCDMEDILLEMDRILRP K +TD M+W+ +I D E+G +REKI
Sbjct: 556 RCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKK-ITDAMQWEGRIGDHENGPLEREKI 614
Query: 62 LFAAK 66
LF K
Sbjct: 615 LFLVK 619
>AT4G18030.1 | chr4:10012850-10015267 REVERSE LENGTH=622
Length = 621
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 3 CDMEDILLEMDRILRPGXXXXXXXXXXXXXXXKNFLTDRMRWDCQIFDGEDGSDDREKIL 62
C +EDILLE DRILRP + + D MRWD ++ D EDG EKIL
Sbjct: 538 CKLEDILLETDRILRPEGIVIFRDEVDVLNDVRK-IVDGMRWDTKLMDHEDGPLVPEKIL 596
Query: 63 FAAK 66
A K
Sbjct: 597 VATK 600
>AT1G26850.1 | chr1:9301146-9303432 REVERSE LENGTH=617
Length = 616
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 2 RCDMEDILLEMDRILRPGXXXXXXXXXXXXXXXKNFLTDRMRWDCQIFDGEDGSDDREKI 61
+C+ +DILLEMDRILRP K + MRWD ++ D EDG EK+
Sbjct: 542 KCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAG-MRWDAKLVDHEDGPLVPEKV 600
Query: 62 LFAAK 66
L A K
Sbjct: 601 LIAVK 605
>AT1G33170.1 | chr1:12027262-12030397 FORWARD LENGTH=640
Length = 639
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 2 RCDMEDILLEMDRILRPGXXXXXXXXXXXXXXXKNFLTDRMRWDCQIFDGEDGSDDREKI 61
RCD+ ILLEMDRILRP ++ +T+ MRW +I D E G + EKI
Sbjct: 568 RCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQS-ITNGMRWKSRILDHERGPFNPEKI 626
Query: 62 LFAAKT 67
L A K+
Sbjct: 627 LLAVKS 632
>AT2G45750.1 | chr2:18842655-18845343 FORWARD LENGTH=632
Length = 631
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 2 RCDMEDILLEMDRILRPGXXXXXXXXXXXXXXXKNFLTDRMRWDCQIFDGEDGSDDREKI 61
+C+ E+ILLEMDRILRPG K LT + W+ +I D E G +REKI
Sbjct: 549 QCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKE-LTKGLEWEGRIADHEKGPHEREKI 607
Query: 62 LFAAK----TCCNDEDRD 75
+A K DED++
Sbjct: 608 YYAVKQYWTVPAPDEDKN 625
>AT4G10440.1 | chr4:6459728-6461932 REVERSE LENGTH=634
Length = 633
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 2 RCDMEDILLEMDRILRP-GXXXXXXXXXXXXXXXKNFLTDRMRWDCQIFDGEDGSDDREK 60
RCD+ ILLEMDRILRP G K + M+W QI D E G + EK
Sbjct: 550 RCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEK--IVKGMKWKSQIVDHEKGPFNPEK 607
Query: 61 ILFAAKTCCNDEDRDQ 76
IL A KT + D+
Sbjct: 608 ILVAVKTYWTGQPSDK 623
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.143 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,458,119
Number of extensions: 41461
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 6
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)