BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0516400 Os10g0516400|AK103655
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64980.1  | chr1:24137840-24138619 REVERSE LENGTH=260          342   9e-95

>AT1G64980.1 | chr1:24137840-24138619 REVERSE LENGTH=260
          Length = 259

 Score =  342 bits (878), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 152/230 (66%), Positives = 187/230 (81%), Gaps = 6/230 (2%)

Query: 7   SAEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRERGPTES 66
           S ++PFR+FVGYDPRED AY+VC  S+ + +SIPV++ PI Q DLR  GLYWRERG  ES
Sbjct: 18  SEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSDLRKKGLYWRERGQLES 77

Query: 67  TEFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGLLACLPSSDPDHRLAVACVKHEYAP 126
           TEFSF+RFLTP+L+ Y+GWA+FVDCDFLYLADI  L   +     D + A+ CV+H+Y P
Sbjct: 78  TEFSFSRFLTPHLSDYQGWAMFVDCDFLYLADIKELTDLI-----DDKYAIMCVQHDYTP 132

Query: 127 AEATKMDGAIQTVYPRKNWSSMVLYNCGHPKNVAALTPDAVSTQTGAFLHRFAWLDDDEI 186
            E TKMDGA+QTVYPRKNWSSMVLYNCGHPKN   L+P+ V+TQTGAFLHRF WL+D+EI
Sbjct: 133 KETTKMDGAVQTVYPRKNWSSMVLYNCGHPKN-KTLSPEIVNTQTGAFLHRFQWLEDEEI 191

Query: 187 GEIPFAWNFLVGHNKVDPADPSTQPKAIHYTSGGPWFERYRNCDFAELWI 236
           G IPF WNFL GHN+V   DP+TQPKA+HYT GGPWF+ +++C+FA+LW+
Sbjct: 192 GSIPFVWNFLEGHNRVVEKDPTTQPKAVHYTRGGPWFDAWKDCEFADLWL 241



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,301,210
Number of extensions: 257918
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)