BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0513300 Os10g0513300|AK102890
(485 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46080.1 | chr2:18948317-18949360 REVERSE LENGTH=348 255 4e-68
AT1G01550.1 | chr1:200526-201575 FORWARD LENGTH=350 244 7e-65
AT4G01360.1 | chr4:565147-566193 FORWARD LENGTH=349 146 2e-35
AT3G61500.2 | chr3:22760628-22762388 REVERSE LENGTH=317 79 5e-15
>AT2G46080.1 | chr2:18948317-18949360 REVERSE LENGTH=348
Length = 347
Score = 255 bits (651), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/258 (50%), Positives = 169/258 (65%), Gaps = 4/258 (1%)
Query: 1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLT 60
MSR PR FFP GNPFR++ G+ LS L LL +E L L+KL P+ D+LT
Sbjct: 1 MSRPQDPPRGFFPFGNPFRMLSSKGSDLSPWLLSLLNGFELRLEERLKKLMPKNKDDILT 60
Query: 61 LSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSR 120
LSWM+LA++ L E H NI LITDL+LPVSDW++KWVD+YLN SV+LLD+C A SSEL+R
Sbjct: 61 LSWMKLAMESLCETHKNINTLITDLQLPVSDWEEKWVDVYLNISVRLLDLCNAFSSELTR 120
Query: 121 LDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAG 180
L+QG L L+ LH L S+SG E+ +A SL W + V R+ +C A L L
Sbjct: 121 LNQGDLFLKCVLHNLQSDSG----EKYLQARSSLDSWRQHVNTNNPRIENCRAVLDSLVK 176
Query: 181 NLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240
+LSL KVKNS KGKVLMRA YG++ TV++CS+F A S S K L +L V EK W++ F
Sbjct: 177 SLSLPKVKNSPKGKVLMRAFYGVKVQTVYICSVFTAAWSDSTKDLFDLPVSEKPLWAKVF 236
Query: 241 NDLHTAVSEELTRQLSGG 258
D+ + V+ E+ LS G
Sbjct: 237 TDMQSVVNAEIRDMLSSG 254
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 403 ISSMSKSAEGLRHGLDSLSKRVGDFFQIVLTGRDALLCNLRISDAAS 449
+ + AE L GLD L + V FF++ L GRD LLCNLR SD+ S
Sbjct: 292 VMELGTQAEKLSQGLDQLLEEVDSFFKLTLRGRDVLLCNLRSSDSIS 338
>AT1G01550.1 | chr1:200526-201575 FORWARD LENGTH=350
Length = 349
Score = 244 bits (623), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 123/251 (49%), Positives = 169/251 (67%), Gaps = 4/251 (1%)
Query: 1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLT 60
M+R PR FFP GNPF+ + + LS KL LL ++E LA S+ KL P+ SD+LT
Sbjct: 1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILT 60
Query: 61 LSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSR 120
+SWM+ A++ L E H I LITDLELPVSDW+DKWVD+YL+ SVKLLD+C A SSEL+R
Sbjct: 61 VSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTR 120
Query: 121 LDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAG 180
L+QG LLLQ+ALH L E+ P + L +A+ SL W + + + R+ +C A L L
Sbjct: 121 LNQGHLLLQFALHNL--EANSP--QNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQ 176
Query: 181 NLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240
L+L KVKNSAKGKVLMRALYG++ T+++ +F A SGS + L+ L V + W+Q+F
Sbjct: 177 TLNLPKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSGSSQNLMYLTVSNELPWAQSF 236
Query: 241 NDLHTAVSEEL 251
++ ++ E+
Sbjct: 237 MEVQNTMNAEI 247
>AT4G01360.1 | chr4:565147-566193 FORWARD LENGTH=349
Length = 348
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 144/252 (57%), Gaps = 17/252 (6%)
Query: 16 NPFRVMF--PGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSE 73
NPF+++F A LS KL LL ++E L +S+R+L P+ +D++++SWM A+ L E
Sbjct: 10 NPFKILFTKKNNARLSPKLLSLLNNFETNLTVSIRELVPKDKNDIVSVSWMIQAMQSLCE 69
Query: 74 LHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALH 133
H +I L+ DLE+PVSD ++ ++ I+ + S+K ++C A +SE+ L+ G LLL++A
Sbjct: 70 THKSIRTLVKDLEVPVSDLEENFIYIFSDFSLK-RELCNAFTSEIYHLEHGNLLLKFAFS 128
Query: 134 VLGSESGVPSQ---EQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNS 190
L + SG Q + + PS+ W G +RLV ++ K K S
Sbjct: 129 KLETNSGNILQRWNQHMVSKNPSIENW----GAVLSRLVESMDHHHHISKK---GKKKYS 181
Query: 191 AKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVP---EKFGWSQAFNDLHTAV 247
A+GKVL+R LYG++ T+++ S+F A SGS K L L +P E+ W QAF +L +
Sbjct: 182 AEGKVLLRVLYGVKVKTLYIFSVFDASFSGSSKNLFYLTIPKEMEELPWVQAFMELQNTI 241
Query: 248 SEELTRQ-LSGG 258
+ E+ LS G
Sbjct: 242 NPEIKNTFLSDG 253
>AT3G61500.2 | chr3:22760628-22762388 REVERSE LENGTH=317
Length = 316
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLT 60
+S+ + + FF FR++FP K LL ++E +L L+KL P+ ++LT
Sbjct: 2 ISKQGITAQCFFRPKKFFRMLFP-------KKNLLLNNFESSLTERLKKLIPQNTDEILT 54
Query: 61 LSWMRLAVDCLSELHTNIANLITDLELP-VSDWDD-KWVDIYLNSSVKLLDICIALSSEL 118
L WM LA++ L + H +I LITDL+L ++D + W + Y+N + KLLD+C A S L
Sbjct: 55 LPWMILAMELLYDTHNDINILITDLKLHYMTDSEHGYWFENYMNINTKLLDLCNAFMSLL 114
Query: 119 SRLDQGQLLLQYALHVLGSES 139
++ G + L++ H L +S
Sbjct: 115 RHMNHGIVCLKFLRHKLEMKS 135
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,350,024
Number of extensions: 354050
Number of successful extensions: 1205
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1205
Number of HSP's successfully gapped: 5
Length of query: 485
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 383
Effective length of database: 8,310,137
Effective search space: 3182782471
Effective search space used: 3182782471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)