BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0511600 Os10g0511600|AK073197
         (95 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18080.1  | chr2:7857198-7859715 FORWARD LENGTH=490            138   7e-34
AT4G36195.1  | chr4:17127202-17129787 FORWARD LENGTH=489          134   1e-32
AT4G36190.1  | chr4:17124052-17126643 FORWARD LENGTH=483          131   6e-32

>AT2G18080.1 | chr2:7857198-7859715 FORWARD LENGTH=490
          Length = 489

 Score =  138 bits (347), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 73/90 (81%)

Query: 5   AASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLPFRIEGDPSNC 64
           AA+KI+FTNGS+DPWRHASKQ S+  MPSYIIKCRNCGHG+D+RGCPQ P  IEG  +NC
Sbjct: 398 AATKIIFTNGSEDPWRHASKQNSTHEMPSYIIKCRNCGHGSDIRGCPQSPMVIEGKSNNC 457

Query: 65  SSPAAVSTVRKQIASHISLWLSQCQEPTRA 94
           S P  V+ VR+Q+  HI LWLS+C++  R+
Sbjct: 458 SLPDYVNKVRQQMVEHIDLWLSECRQSIRS 487



>AT4G36195.1 | chr4:17127202-17129787 FORWARD LENGTH=489
          Length = 488

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 70/90 (77%)

Query: 5   AASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLPFRIEGDPSNC 64
           AA+KI+FTNGSQDPWRHASKQ SS  +PSYI+ C NCGHG+DLRGCPQ P  I GD  NC
Sbjct: 397 AATKIIFTNGSQDPWRHASKQTSSPELPSYIVTCHNCGHGSDLRGCPQSPMVIGGDSKNC 456

Query: 65  SSPAAVSTVRKQIASHISLWLSQCQEPTRA 94
           SSP AV+ VR+ I  H+ LWLS+C+   R+
Sbjct: 457 SSPDAVNKVRQHIVDHMDLWLSECRGGIRS 486



>AT4G36190.1 | chr4:17124052-17126643 FORWARD LENGTH=483
          Length = 482

 Score =  131 bits (330), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 68/85 (80%)

Query: 5   AASKIVFTNGSQDPWRHASKQKSSKYMPSYIIKCRNCGHGTDLRGCPQLPFRIEGDPSNC 64
           AA+KI+FTNGSQDPWRHASKQ SS  +PSYI+ C NCGHG+DLRGCPQ    IEGD  NC
Sbjct: 397 AATKIIFTNGSQDPWRHASKQTSSPDLPSYIMTCHNCGHGSDLRGCPQSAMVIEGDAQNC 456

Query: 65  SSPAAVSTVRKQIASHISLWLSQCQ 89
           SSP AV+ VR+ +  HI LWLS+C+
Sbjct: 457 SSPDAVNKVRQHMIKHIDLWLSECR 481



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.129    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,326,684
Number of extensions: 86125
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 3
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)