BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0507600 Os10g0507600|AK058656
(240 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257 161 2e-40
AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240 156 9e-39
AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240 145 2e-35
AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150 126 8e-30
AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221 123 1e-28
AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638 116 1e-26
AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387 115 2e-26
>AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257
Length = 256
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 131/238 (55%), Gaps = 36/238 (15%)
Query: 3 ASCDLVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGXXXX 62
++ +L+ V+P +LQFPFEL KQISC L + NKT+ VAFKVKTT+PKKYCVRPN G
Sbjct: 18 SNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLP 77
Query: 63 XXXXXXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKL 122
TMQAQ AP D+QCKDKFL+Q V+ G++AK++T +MF ++ + VEE KL
Sbjct: 78 RSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKL 137
Query: 123 KVSYVXXXXXXXXXXXXSDIPKRILVPMQRILDNGRSGSELSSGNVSLRSAEMGTELGSP 182
+V+YV P R P+ + G SS S+ G+E
Sbjct: 138 RVTYVA--------------PPRPPSPVHEGSEEG------SSPRASVSDNGHGSEFS-- 175
Query: 183 LGRFVRNEDMLKTASPVVETRVHAGPDEQYLELSALVAKLTEEKKSALEQNRKLREEL 240
RF+ + AG E E AL+ KLTEEK+SA++ N +L+ EL
Sbjct: 176 FERFIVDNK--------------AGHQENTSEARALITKLTEEKQSAIQLNNRLQREL 219
>AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240
Length = 239
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 128/239 (53%), Gaps = 40/239 (16%)
Query: 4 SCDLVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGXXXXX 63
S +L+ +DP +LQFPFEL KQISC L + NKT+ VAFKVKTT+PKKYCVRPN G
Sbjct: 2 SNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPR 61
Query: 64 XXXXXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLK 123
TMQAQ AP DLQCKDKFL+Q VV G + KD+T +MF ++ + VEE KL+
Sbjct: 62 SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLR 121
Query: 124 VSYVXXXXXXXXXXXXSDIPKRILVPMQRILDNGRSGSELSSGNVSLRSAEMGTELGSPL 183
V YV P R P+ R GSE E SP
Sbjct: 122 VVYVA--------------PPRPPSPV-------REGSE---------------EGSSPR 145
Query: 184 GRFVRNEDMLK-TASPVVET-RVHAGPDEQYLELSALVAKLTEEKKSALEQNRKLREEL 240
N + TA+P RV A + E ALV KLTEEK SA++ N +L++EL
Sbjct: 146 ASVSDNGNASDFTAAPRFSADRVDA--QDNSSEARALVTKLTEEKNSAVQLNNRLQQEL 202
>AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240
Length = 239
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 43/238 (18%)
Query: 6 DLVDVDPPELQFPFELDKQISCPLRIANKTE-RTVAFKVKTTSPKKYCVRPNNGXXXXXX 64
DLV++ P EL+FPFEL KQ SC +++ NKT + VAFKVKTT+P+KYCVRPN G
Sbjct: 5 DLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGD 64
Query: 65 XXXXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLKV 124
TMQAQ AP D+QCKDKFLVQ+VVV DG ++K++ ++MF ++ ++E+ KL+V
Sbjct: 65 SCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRV 124
Query: 125 SYVXXXXXXXXXXXXSDIPKRILVPMQRILDNGRSGSELSSGNVSLRSAEMGTELGSPLG 184
Y+ S +P+ GSE E SP+
Sbjct: 125 VYI-------PANPPSPVPE---------------GSE---------------EGNSPMA 147
Query: 185 RFVRNEDMLKTASPVVE--TRVHAGPDEQYLELSALVAKLTEEKKSALEQNRKLREEL 240
D+ ++ + + +R E+ E ++++KLTEEK SA +Q++KLR EL
Sbjct: 148 SL---NDIASQSASLFDDVSRTFEETSEKSSEAWSMISKLTEEKTSATQQSQKLRLEL 202
>AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150
Length = 149
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 84/122 (68%)
Query: 6 DLVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGXXXXXXX 65
+L++++P LQFPFEL KQ+SC L + NKT+ VAFKVKTT+ YCVRPN G
Sbjct: 5 ELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKST 64
Query: 66 XXXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLKVS 125
TMQAQ P D+Q +KF++QSV+ G++AK++T +MF ++ ++VEE KL+V+
Sbjct: 65 CKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVT 124
Query: 126 YV 127
YV
Sbjct: 125 YV 126
>AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221
Length = 220
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 76/121 (62%)
Query: 7 LVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGXXXXXXXX 66
L+ + P EL+F FEL+KQ C L++ANKTE VAFKVKTTSPKKY VRPN G
Sbjct: 9 LISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSC 68
Query: 67 XXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLKVSY 126
T+QAQ PPD+QCKDKFL+QS +V ++ F +D + E KLKVSY
Sbjct: 69 IIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSY 128
Query: 127 V 127
+
Sbjct: 129 I 129
>AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638
Length = 637
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%)
Query: 6 DLVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGXXXXXXX 65
+L+ +DP ++QFP EL+K++SC L + NKTE VAFK KTT+ KKY VRPN G
Sbjct: 175 ELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS 234
Query: 66 XXXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLKVS 125
MQA AP D+QC+DK L Q VV+ +AKD+TS+MF ++ + EE +LKV
Sbjct: 235 CEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVM 294
Query: 126 YV 127
YV
Sbjct: 295 YV 296
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 97/194 (50%), Gaps = 16/194 (8%)
Query: 6 DLVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGXXXXXXX 65
+L+ D +++FP EL+KQ SC L + NKT+ VAFK +TT PK YCV+P+ G
Sbjct: 5 ELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSS 64
Query: 66 XXXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLKVS 125
MQA AP D QCKDK L Q VV+ G K++TS+MF ++ + VEE K+
Sbjct: 65 CEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKII 124
Query: 126 YVXXXXXXXXXXXXSDIPKRILVPMQRILDNGRSGSELSSGNVSLRSAEMGTELGSPLGR 185
YV P + P+Q L++G S S S + +G +G +
Sbjct: 125 YVA--------------PPQPQSPVQEGLEDGSSPSASVSDKGNASEVFVGPSVG--IVD 168
Query: 186 FVRNEDMLKTASPV 199
+R D L PV
Sbjct: 169 LIRMSDELLIIDPV 182
>AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387
Length = 386
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 74/121 (61%)
Query: 7 LVDVDPPELQFPFELDKQISCPLRIANKTERTVAFKVKTTSPKKYCVRPNNGXXXXXXXX 66
L+D+ P LQF +L KQ SC +++ N T VAFKVKTTSPKKYCVRPN G
Sbjct: 5 LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64
Query: 67 XXXXTMQAQIVAPPDLQCKDKFLVQSVVVDDGLSAKDITSQMFLRDENNMVEEVKLKVSY 126
MQA PPD+ CKDKFL+QS V + +DIT+ MF + E +EE KL+V+
Sbjct: 65 EFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTL 124
Query: 127 V 127
V
Sbjct: 125 V 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,450,854
Number of extensions: 156969
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 8
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)