BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0505500 Os10g0505500|AK062529
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104 76 3e-15
AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104 70 3e-13
AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95 64 1e-11
AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103 64 2e-11
AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99 62 5e-11
AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97 58 9e-10
AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97 58 9e-10
AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104 57 1e-09
AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96 55 7e-09
AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100 55 1e-08
AT1G07747.1 | chr1:2403558-2403845 FORWARD LENGTH=96 54 2e-08
AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96 50 2e-07
AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99 49 4e-07
AT4G12825.1 | chr4:7529471-7529758 FORWARD LENGTH=96 49 7e-07
AT1G43665.1 | chr1:16452981-16453804 REVERSE LENGTH=124 48 1e-06
>AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104
Length = 103
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
CD QLS+C +P+ G PS CC L+ QQ C C Y KDP Y+ YV + NA+KT+A
Sbjct: 38 CDAVQLSSCATPMLTGVPPSTECCGKLKEQQP--CFCTYIKDPRYSQYVGSANAKKTLAT 95
Query: 87 CGIPIPSC 94
CG+P P+C
Sbjct: 96 CGVPYPTC 103
>AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104
Length = 103
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
CD QLS+CV+ + G PS CC L+ + E CLC Y ++P Y+SYV + NARKT+AA
Sbjct: 38 CDATQLSSCVTAVSTGAPPSTDCCGKLK--EHETCLCTYIQNPLYSSYVTSPNARKTLAA 95
Query: 87 CGIPIPSC 94
C + P+C
Sbjct: 96 CDVAYPTC 103
>AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95
Length = 94
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C P QL++C + + + PSE+CC+ LR QQ CLC Y ++PT YV++ NARK +
Sbjct: 29 CSPMQLASCAAAMTSSSPPSEACCTKLREQQP--CLCGYMRNPTLRQYVSSPNARKVSNS 86
Query: 87 CGIPIPSC 94
C IP PSC
Sbjct: 87 CKIPSPSC 94
>AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103
Length = 102
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
CD QL C++ I G PS +CC+ L QQ CLC +AK+P +A Y+++ NARK + A
Sbjct: 37 CDARQLQPCLAAITGGGQPSGACCAKLTEQQS--CLCGFAKNPAFAQYISSPNARKVLLA 94
Query: 87 CGIPIPSC 94
C + P+C
Sbjct: 95 CNVAYPTC 102
>AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99
Length = 98
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C+P QLS C+ I G+ PS+ CCS ++ QQ C+CQY K+P + S++N+ NA+
Sbjct: 33 CNPAQLSPCLETIMKGSEPSDLCCSKVKEQQH--CICQYLKNPNFKSFLNSPNAKIIATD 90
Query: 87 CGIPIPSC 94
C P P C
Sbjct: 91 CHCPYPKC 98
>AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97
Length = 96
Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C P QLS C + I + PS CC+ L+ Q+ CLC Y ++P+ +V+ NARK +
Sbjct: 31 CSPMQLSPCATAITSSSPPSALCCAKLKEQR--PCLCGYMRNPSLRRFVSTPNARKVSKS 88
Query: 87 CGIPIPSC 94
C +PIP C
Sbjct: 89 CKLPIPRC 96
>AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97
Length = 96
Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
CD + C I G+ PSE CC L+ QQ CLC Y P+ + Y+ NA++ I A
Sbjct: 32 CDFTKFQVCKPEIITGSPPSEECCEKLKEQQ--SCLCAYLISPSISQYIG--NAKRVIRA 87
Query: 87 CGIPIPSC 94
CGIP P+C
Sbjct: 88 CGIPFPNC 95
>AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104
Length = 103
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C L +C+ I G+ P CC L+ QQ CLC Y K PT+ YV NA K +AA
Sbjct: 38 CIVTNLMSCLPAILKGSQPPAYCCEMLKEQQS--CLCGYIKSPTFGHYVIPQNAHKLLAA 95
Query: 87 CGIPIPSC 94
CGI P C
Sbjct: 96 CGILYPKC 103
>AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96
Length = 95
Score = 55.1 bits (131), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C P +L C+ + G P++ CC L +QKE CLC Y +P Y+++V++ ARK +
Sbjct: 30 CIPTELMPCLPAMTTGGQPTKDCCDKL-IEQKE-CLCGYINNPLYSTFVSSPVARKVLEV 87
Query: 87 CGIPIPSC 94
C IP PSC
Sbjct: 88 CNIPYPSC 95
>AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100
Length = 99
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 32 LSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAACGIPI 91
L C+ + G+ PS CC L+ Q CLC Y K P++ YV++ A+K + AC IPI
Sbjct: 39 LRVCLPAVEAGSQPSVQCCGKLKEQL--SCLCGYLKIPSFTQYVSSGKAQKVLTACAIPI 96
Query: 92 PSC 94
P C
Sbjct: 97 PKC 99
>AT1G07747.1 | chr1:2403558-2403845 FORWARD LENGTH=96
Length = 95
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C L AC+ I T PS CC+ L+ K+ C C+Y K+P A Y+ T+A++ + A
Sbjct: 29 CVVTDLKACLPDIIGETPPSTKCCTKLK--DKKSCFCEYLKNPLIAPYM--TSAKQVLEA 84
Query: 87 CGIPIPSC 94
CG+P+P C
Sbjct: 85 CGVPVPVC 92
>AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96
Length = 95
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C P +L C+ + P++ CC NL Q+ CLC Y K+P Y+ + + ARK +
Sbjct: 30 CVPMELMPCLPAMTKREQPTKDCCENLIKQK--TCLCDYIKNPLYSMFTISLVARKVLET 87
Query: 87 CGIPIPSC 94
C +P SC
Sbjct: 88 CNVPYTSC 95
>AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99
Length = 98
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C +L C+ + G+ PS CC L+ Q C C Y ++P ++ Y+ T A++ +AA
Sbjct: 35 CTVTELQPCLPSVIDGSQPSTQCCEKLKEQ--NSCFCDYLQNPQFSQYI--TAAKQILAA 90
Query: 87 CGIPIPSC 94
C IP P+C
Sbjct: 91 CKIPYPNC 98
>AT4G12825.1 | chr4:7529471-7529758 FORWARD LENGTH=96
Length = 95
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C L C S + G S+ CC L+ QQ C C+Y KDP Y+ T A+ +AA
Sbjct: 32 CVMANLQICKSAVTTGNPHSKECCEKLKEQQ--SCFCEYLKDPLVVPYI--TYAKIILAA 87
Query: 87 CGIPIPSC 94
CG+ P+C
Sbjct: 88 CGLSFPNC 95
>AT1G43665.1 | chr1:16452981-16453804 REVERSE LENGTH=124
Length = 123
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
C L C+S + PS CC NL+ Q+ CLC Y ++P+ Y+ ARK AA
Sbjct: 34 CIVTDLQVCLSALETPIPPSAECCKNLKIQK--SCLCDYMENPSIEKYLE--PARKVFAA 89
Query: 87 CGIPIP 92
CG+P P
Sbjct: 90 CGMPYP 95
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.130 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,729,616
Number of extensions: 57377
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 16
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)